Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 RNU6-490P-201ENST00000362985 107 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 Y_RNA.210-201ENST00000364161 110 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 RNU6-266P-201ENST00000364225 107 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 Y_RNA.288-201ENST00000364854 92 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 RNA5SP279-201ENST00000365513 117 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 RHOT1P2-201ENST00000366423 333 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 SNORA24.1-201ENST00000384401 135 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 RNU6-328P-201ENST00000390887 106 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 ATG3P1-201ENST00000419507 911 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 RPL7P46-201ENST00000425129 740 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 AC105402.2-201ENST00000438503 358 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 AC023141.8-201ENST00000442554 208 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 RN7SL168P-201ENST00000463821 279 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 AC092324.1-201ENST00000468671 324 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 AC103987.1-201ENST00000473394 348 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 AC022493.2-201ENST00000506122 481 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 AC116655.1-201ENST00000508324 901 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 AC104806.1-201ENST00000508720 308 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 HIGD1AP13-201ENST00000509878 289 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 AC018797.1-201ENST00000510791 255 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 RNU6-408P-201ENST00000515910 100 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 RNU2-53P-201ENST00000516257 147 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 RNU6-798P-201ENST00000516912 103 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 IGKV3D-25-201ENST00000519599 235 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 AC131281.1-201ENST00000522984 164 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 AP000889.1-201ENST00000530968 660 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 AC006512.2-201ENST00000543250 486 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 RPA2P1-201ENST00000556557 721 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 AC091078.2-201ENST00000557145 559 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 AL133153.1-201ENST00000557756 303 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 AC124916.2-201ENST00000604416 224 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 MIR6809-201ENST00000612189 116 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 AL136228.1-201ENST00000622221 319 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 MPP6-209ENST00000625307 126 ntTSL 5 BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 AC009229.4-201ENST00000623854 1947 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 AC011755.1-201ENST00000623763 2049 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 AC138907.8-201ENST00000623981 2256 ntBASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 SAGE4P-201ENST00000442271 3381 ntBASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 MIR130B-202ENST00000385018 82 ntBASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 RNA5SP91-201ENST00000390902 119 ntBASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 GCNT1P4-201ENST00000404096 329 ntBASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 MTATP6P29-201ENST00000415057 132 ntBASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 AC113412.1-201ENST00000425840 504 ntBASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 RPL12P17-201ENST00000432393 498 ntBASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 PNKDP1-201ENST00000435914 430 ntBASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 HMGB3P21-201ENST00000452483 547 ntBASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 SCARNA18-201ENST00000459004 134 ntBASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 AC006967.1-201ENST00000467608 589 ntBASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 RN7SL809P-201ENST00000482040 297 ntBASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 AC105384.2-201ENST00000508433 640 ntBASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 RN7SKP35-201ENST00000517210 151 ntBASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 FAM60DP-201ENST00000524174 632 ntBASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 AC023157.2-201ENST00000540596 141 ntBASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 AC020910.3-201ENST00000603701 874 ntBASIC5.25□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 128.7 ms