Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 AC069218.2-201ENST00000411665 344 ntBASIC4.13□□□□□ -1.75
ZNF541Q9H0D2 HMGN1P24-201ENST00000412282 298 ntBASIC4.13□□□□□ -1.75
ZNF541Q9H0D2 AL136133.1-201ENST00000413694 376 ntBASIC4.13□□□□□ -1.75
ZNF541Q9H0D2 NAP1L1P2-201ENST00000414182 1089 ntBASIC4.13□□□□□ -1.75
ZNF541Q9H0D2 MTCO3P1-205ENST00000422088 832 ntBASIC4.13□□□□□ -1.75
ZNF541Q9H0D2 Z93242.1-201ENST00000427102 353 ntBASIC4.13□□□□□ -1.75
ZNF541Q9H0D2 AC096632.1-201ENST00000427395 310 ntBASIC4.13□□□□□ -1.75
ZNF541Q9H0D2 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC4.13□□□□□ -1.75
ZNF541Q9H0D2 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.13□□□□□ -1.75
ZNF541Q9H0D2 RPS26P56-201ENST00000444468 240 ntBASIC4.13□□□□□ -1.75
ZNF541Q9H0D2 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC4.13□□□□□ -1.75
ZNF541Q9H0D2 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.13□□□□□ -1.75
ZNF541Q9H0D2 AC010307.1-201ENST00000467206 836 ntBASIC4.13□□□□□ -1.75
ZNF541Q9H0D2 AC087879.1-201ENST00000474343 374 ntBASIC4.13□□□□□ -1.75
ZNF541Q9H0D2 MTCO3P35-201ENST00000485582 781 ntBASIC4.13□□□□□ -1.75
ZNF541Q9H0D2 BOLA3P3-201ENST00000505182 232 ntBASIC4.13□□□□□ -1.75
ZNF541Q9H0D2 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
ZNF541Q9H0D2 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.13□□□□□ -1.75
ZNF541Q9H0D2 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC4.13□□□□□ -1.75
ZNF541Q9H0D2 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.13□□□□□ -1.75
ZNF541Q9H0D2 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC4.13□□□□□ -1.75
ZNF541Q9H0D2 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC4.13□□□□□ -1.75
ZNF541Q9H0D2 AC022080.3-201ENST00000544433 482 ntBASIC4.13□□□□□ -1.75
ZNF541Q9H0D2 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC4.13□□□□□ -1.75
ZNF541Q9H0D2 AL161713.1-201ENST00000555538 145 ntBASIC4.13□□□□□ -1.75
ZNF541Q9H0D2 AC006539.2-201ENST00000601729 572 ntBASIC4.13□□□□□ -1.75
ZNF541Q9H0D2 AL390838.2-201ENST00000602394 274 ntBASIC4.13□□□□□ -1.75
ZNF541Q9H0D2 HNRNPDLP4-201ENST00000605144 301 ntBASIC4.13□□□□□ -1.75
ZNF541Q9H0D2 AC013244.3-201ENST00000605614 388 ntBASIC4.13□□□□□ -1.75
ZNF541Q9H0D2 AC092954.1-201ENST00000609121 445 ntBASIC4.13□□□□□ -1.75
ZNF541Q9H0D2 DLD-214ENST00000639772 421 ntTSL 5 BASIC4.13□□□□□ -1.75
ZNF541Q9H0D2 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
ZNF541Q9H0D2 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
ZNF541Q9H0D2 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 PNPT1P2-201ENST00000456768 2050 ntBASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 FER-202ENST00000438717 1531 ntTSL 2 BASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 MIR449A-201ENST00000362113 91 ntBASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 RNU6-7-201ENST00000364784 107 ntBASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 RNU6-8-201ENST00000365467 107 ntBASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 SNORA40.2-201ENST00000390847 128 ntBASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 SNORD65.1-201ENST00000390889 71 ntBASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 RNU2-42P-201ENST00000410697 113 ntBASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 AC004552.1-201ENST00000419089 348 ntBASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 NANOGP6-201ENST00000429190 847 ntBASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 PSMA2P3-201ENST00000429685 675 ntBASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 GTF2IP7-202ENST00000436677 309 ntBASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 AL034418.1-201ENST00000448675 860 ntBASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 RPS26P3-201ENST00000470205 348 ntBASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 S100A11P1-201ENST00000477525 312 ntBASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 KC877373.1-201ENST00000479066 408 ntBASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 AC090543.2-201ENST00000483963 348 ntBASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 AC004057.1-201ENST00000485827 348 ntBASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 AC020699.1-201ENST00000505161 445 ntBASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 AC109458.1-201ENST00000508858 316 ntBASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 AC093755.1-201ENST00000512950 1023 ntBASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 AC087808.1-201ENST00000520501 361 ntBASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 AC135001.1-201ENST00000544546 283 ntBASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 LSM6P2-201ENST00000552208 177 ntBASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 AC005476.1-201ENST00000554427 397 ntBASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 MTCYBP28-201ENST00000566728 1132 ntBASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 AL035411.2-201ENST00000604022 421 ntBASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 AL162713.1-201ENST00000604480 262 ntBASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 AL009028.1-201ENST00000604895 802 ntBASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 AP003392.5-201ENST00000607857 415 ntBASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 FAM157B-203ENST00000639350 358 ntBASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 LINC02471-203ENST00000641941 4752 ntBASIC4.12□□□□□ -1.75
ZNF541Q9H0D2 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
ZNF541Q9H0D2 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
ZNF541Q9H0D2 RNU1-140P-201ENST00000365040 165 ntBASIC4.11□□□□□ -1.75
ZNF541Q9H0D2 RNU6-441P-201ENST00000384545 106 ntBASIC4.11□□□□□ -1.75
ZNF541Q9H0D2 MIR217-201ENST00000384817 110 ntBASIC4.11□□□□□ -1.75
ZNF541Q9H0D2 AL138885.1-201ENST00000405921 675 ntBASIC4.11□□□□□ -1.75
ZNF541Q9H0D2 RPL23AP47-201ENST00000408017 460 ntBASIC4.11□□□□□ -1.75
ZNF541Q9H0D2 RNA5SP80-201ENST00000410475 111 ntBASIC4.11□□□□□ -1.75
ZNF541Q9H0D2 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC4.11□□□□□ -1.75
ZNF541Q9H0D2 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC4.11□□□□□ -1.75
ZNF541Q9H0D2 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC4.11□□□□□ -1.75
ZNF541Q9H0D2 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC4.11□□□□□ -1.75
ZNF541Q9H0D2 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC4.11□□□□□ -1.75
ZNF541Q9H0D2 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC4.11□□□□□ -1.75
ZNF541Q9H0D2 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC4.11□□□□□ -1.75
ZNF541Q9H0D2 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms