Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC4.53□□□□□ -1.69
CCDC140Q96MF4 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 Y_RNA.146-201ENST00000363549 102 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 RN7SKP44-201ENST00000363602 316 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 RNA5SP433-201ENST00000364491 114 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 RN7SKP275-201ENST00000364626 301 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 SNORA4.3-201ENST00000365564 137 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 SNORD42.2-201ENST00000365570 69 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 MIR606-201ENST00000384851 96 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 RPL5P18-201ENST00000406671 891 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 RPS12P24-201ENST00000412619 387 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 AC244098.2-201ENST00000422068 99 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 RPL21P109-201ENST00000422213 475 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 AL160275.3-201ENST00000423876 471 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 MTCO1P39-201ENST00000426148 480 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 AC115283.1-201ENST00000427353 400 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 AL590399.2-201ENST00000427536 309 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 AL669831.1-202ENST00000428504 417 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 Y_RNA.631-201ENST00000459607 101 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 RPL23AP2-201ENST00000471227 466 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 OARD1-209ENST00000471367 401 ntTSL 2 BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 RN7SL57P-201ENST00000493687 290 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 CBX1-205ENST00000495350 550 ntTSL 2 BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 MRPS33P2-201ENST00000507850 322 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 SNORA14.1-201ENST00000516113 141 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 RNU6-1045P-201ENST00000516321 107 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 RNA5SP438-201ENST00000516561 112 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 AC005363.1-201ENST00000530779 351 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 PCNAP4-201ENST00000532690 730 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 AC126615.2-201ENST00000553003 515 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 RPL23AP87-202ENST00000573039 466 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 MIR5692C1-201ENST00000585309 91 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 AC023043.2-201ENST00000589678 1026 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 HMGB2P1-201ENST00000591146 634 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 AL080274.1-201ENST00000605565 220 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 AL162730.1-201ENST00000605734 292 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 CGA-206ENST00000630630 832 ntTSL 2 BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 AC008013.2-202ENST00000637965 364 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 AP004607.3-201ENST00000530354 3915 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 AC093849.1-201ENST00000563631 2209 ntBASIC4.52□□□□□ -1.69
CCDC140Q96MF4 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC4.52□□□□□ -1.69
CCDC140Q96MF4 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC140Q96MF4 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC140Q96MF4 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
CCDC140Q96MF4 AC009812.4-201ENST00000569134 1805 ntBASIC4.51□□□□□ -1.69
CCDC140Q96MF4 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC140Q96MF4 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC140Q96MF4 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC4.51□□□□□ -1.69
CCDC140Q96MF4 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC4.51□□□□□ -1.69
CCDC140Q96MF4 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC140Q96MF4 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC140Q96MF4 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC4.51□□□□□ -1.69
CCDC140Q96MF4 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC140Q96MF4 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC140Q96MF4 Y_RNA.399-201ENST00000383955 105 ntBASIC4.51□□□□□ -1.69
CCDC140Q96MF4 SNORA36C-201ENST00000384289 132 ntBASIC4.51□□□□□ -1.69
CCDC140Q96MF4 RNU6ATAC16P-201ENST00000408591 138 ntBASIC4.51□□□□□ -1.69
CCDC140Q96MF4 RPLP0P7-201ENST00000416050 667 ntBASIC4.51□□□□□ -1.69
CCDC140Q96MF4 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC140Q96MF4 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC4.51□□□□□ -1.69
CCDC140Q96MF4 CRIP1P1-201ENST00000427567 185 ntBASIC4.51□□□□□ -1.69
CCDC140Q96MF4 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms