Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.21□□□□□ -1.9
USP54Q70EL1 AC004696.1-201ENST00000614345 607 ntBASIC3.21□□□□□ -1.9
USP54Q70EL1 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC3.21□□□□□ -1.9
USP54Q70EL1 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.21□□□□□ -1.9
USP54Q70EL1 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.21□□□□□ -1.9
USP54Q70EL1 MTND5P6-201ENST00000422338 1798 ntBASIC3.21□□□□□ -1.9
USP54Q70EL1 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC3.21□□□□□ -1.9
USP54Q70EL1 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
USP54Q70EL1 UQCRFS1P3-201ENST00000407697 385 ntBASIC3.2□□□□□ -1.9
USP54Q70EL1 AC244505.4-201ENST00000434905 287 ntBASIC3.2□□□□□ -1.9
USP54Q70EL1 SSXP5-201ENST00000443473 287 ntBASIC3.2□□□□□ -1.9
USP54Q70EL1 RPL21P99-201ENST00000480369 423 ntBASIC3.2□□□□□ -1.9
USP54Q70EL1 AC061975.8-201ENST00000587058 721 ntBASIC3.2□□□□□ -1.9
USP54Q70EL1 AC010680.4-201ENST00000605334 543 ntBASIC3.2□□□□□ -1.9
USP54Q70EL1 EXOC5P1-201ENST00000510543 1969 ntBASIC3.2□□□□□ -1.9
USP54Q70EL1 CUL1P1-201ENST00000509510 2425 ntBASIC3.2□□□□□ -1.9
USP54Q70EL1 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC3.2□□□□□ -1.9
USP54Q70EL1 AL133412.1-201ENST00000380194 2992 ntBASIC3.2□□□□□ -1.9
USP54Q70EL1 SNORA41-201ENST00000384675 132 ntBASIC3.2□□□□□ -1.9
USP54Q70EL1 ATG3P1-201ENST00000419507 911 ntBASIC3.2□□□□□ -1.9
USP54Q70EL1 AL513175.2-201ENST00000422071 443 ntBASIC3.2□□□□□ -1.9
USP54Q70EL1 AL031736.2-201ENST00000426573 787 ntBASIC3.2□□□□□ -1.9
USP54Q70EL1 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC3.2□□□□□ -1.9
USP54Q70EL1 AC092185.1-201ENST00000491371 97 ntBASIC3.2□□□□□ -1.9
USP54Q70EL1 OR4H12P-201ENST00000556269 907 ntBASIC3.2□□□□□ -1.9
USP54Q70EL1 AC067747.1-201ENST00000608026 250 ntBASIC3.2□□□□□ -1.9
USP54Q70EL1 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
USP54Q70EL1 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
USP54Q70EL1 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.2□□□□□ -1.9
USP54Q70EL1 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.19□□□□□ -1.9
USP54Q70EL1 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
USP54Q70EL1 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
USP54Q70EL1 RPL21P132-201ENST00000331267 462 ntBASIC3.19□□□□□ -1.9
USP54Q70EL1 NAP1L4P3-201ENST00000432820 1147 ntBASIC3.19□□□□□ -1.9
USP54Q70EL1 AC104389.3-201ENST00000445629 235 ntBASIC3.19□□□□□ -1.9
USP54Q70EL1 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC3.19□□□□□ -1.9
USP54Q70EL1 RNA5SP458-201ENST00000516188 119 ntBASIC3.19□□□□□ -1.9
USP54Q70EL1 MIR5007-201ENST00000583098 95 ntBASIC3.19□□□□□ -1.9
USP54Q70EL1 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC3.19□□□□□ -1.9
USP54Q70EL1 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.19□□□□□ -1.9
USP54Q70EL1 MIR6766-201ENST00000622641 72 ntBASIC3.19□□□□□ -1.9
USP54Q70EL1 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
USP54Q70EL1 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
USP54Q70EL1 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC3.19□□□□□ -1.9
USP54Q70EL1 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
USP54Q70EL1 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
USP54Q70EL1 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
USP54Q70EL1 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
USP54Q70EL1 RNU1-73P-201ENST00000383971 164 ntBASIC3.18□□□□□ -1.9
USP54Q70EL1 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
USP54Q70EL1 AL591416.1-201ENST00000404015 867 ntBASIC3.18□□□□□ -1.9
USP54Q70EL1 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.18□□□□□ -1.9
USP54Q70EL1 AC012498.1-201ENST00000424037 437 ntBASIC3.18□□□□□ -1.9
USP54Q70EL1 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC3.18□□□□□ -1.9
USP54Q70EL1 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC3.18□□□□□ -1.9
USP54Q70EL1 OR4G11P-201ENST00000492842 939 ntBASIC3.18□□□□□ -1.9
USP54Q70EL1 AC026436.1-201ENST00000510537 270 ntBASIC3.18□□□□□ -1.9
USP54Q70EL1 AC044913.1-201ENST00000557200 430 ntBASIC3.18□□□□□ -1.9
USP54Q70EL1 AC015712.3-201ENST00000559380 164 ntBASIC3.18□□□□□ -1.9
USP54Q70EL1 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.18□□□□□ -1.9
USP54Q70EL1 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
USP54Q70EL1 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
USP54Q70EL1 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.18□□□□□ -1.9
USP54Q70EL1 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
USP54Q70EL1 AL450326.2-201ENST00000421913 1962 ntBASIC3.17□□□□□ -1.9
USP54Q70EL1 MIR365B-201ENST00000362317 111 ntBASIC3.17□□□□□ -1.9
USP54Q70EL1 RNU6-1320P-201ENST00000390838 107 ntBASIC3.17□□□□□ -1.9
USP54Q70EL1 RNU6-1269P-201ENST00000391139 107 ntBASIC3.17□□□□□ -1.9
USP54Q70EL1 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC3.17□□□□□ -1.9
USP54Q70EL1 HMGB1P15-201ENST00000453854 435 ntBASIC3.17□□□□□ -1.9
USP54Q70EL1 RNU6-599P-201ENST00000459383 107 ntBASIC3.17□□□□□ -1.9
USP54Q70EL1 RNU6-1193P-201ENST00000459461 107 ntBASIC3.17□□□□□ -1.9
USP54Q70EL1 RPL30P9-201ENST00000465586 330 ntBASIC3.17□□□□□ -1.9
USP54Q70EL1 ZDHHC20P3-201ENST00000531576 336 ntBASIC3.17□□□□□ -1.9
USP54Q70EL1 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.17□□□□□ -1.9
USP54Q70EL1 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC3.17□□□□□ -1.9
USP54Q70EL1 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC3.17□□□□□ -1.9
USP54Q70EL1 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC3.17□□□□□ -1.9
USP54Q70EL1 BX664608.1-201ENST00000610519 487 ntBASIC3.17□□□□□ -1.9
USP54Q70EL1 RNU6-368P-201ENST00000620928 107 ntBASIC3.17□□□□□ -1.9
USP54Q70EL1 RNU6-538P-201ENST00000622329 107 ntBASIC3.17□□□□□ -1.9
USP54Q70EL1 AC026634.1-201ENST00000634369 198 ntBASIC3.17□□□□□ -1.9
USP54Q70EL1 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.17□□□□□ -1.9
USP54Q70EL1 CR382285.2-201ENST00000624662 1495 ntBASIC3.17□□□□□ -1.9
USP54Q70EL1 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.17□□□□□ -1.9
USP54Q70EL1 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC3.17□□□□□ -1.9
USP54Q70EL1 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
USP54Q70EL1 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
USP54Q70EL1 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
USP54Q70EL1 Z99127.2-201ENST00000441426 334 ntBASIC3.17□□□□□ -1.9
USP54Q70EL1 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.17□□□□□ -1.9
USP54Q70EL1 AC092436.1-201ENST00000506450 503 ntBASIC3.17□□□□□ -1.9
USP54Q70EL1 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.17□□□□□ -1.9
USP54Q70EL1 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC3.17□□□□□ -1.9
USP54Q70EL1 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC3.17□□□□□ -1.9
USP54Q70EL1 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
USP54Q70EL1 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC3.17□□□□□ -1.9
USP54Q70EL1 AC016542.2-201ENST00000624201 619 ntBASIC3.17□□□□□ -1.9
USP54Q70EL1 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
USP54Q70EL1 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 132.4 ms