Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC4.03□□□□□ -1.76
COL28A1Q2UY09 CYP4A43P-201ENST00000568156 121 ntBASIC4.03□□□□□ -1.76
COL28A1Q2UY09 AC120057.2-201ENST00000571520 271 ntBASIC4.03□□□□□ -1.76
COL28A1Q2UY09 AC136618.2-201ENST00000575091 400 ntBASIC4.03□□□□□ -1.76
COL28A1Q2UY09 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC4.03□□□□□ -1.76
COL28A1Q2UY09 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC4.03□□□□□ -1.76
COL28A1Q2UY09 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC4.03□□□□□ -1.76
COL28A1Q2UY09 EIF4A2P1-201ENST00000587313 1063 ntBASIC4.03□□□□□ -1.76
COL28A1Q2UY09 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC4.03□□□□□ -1.76
COL28A1Q2UY09 AC079587.1-201ENST00000603846 277 ntBASIC4.03□□□□□ -1.76
COL28A1Q2UY09 AL139286.1-201ENST00000604465 483 ntBASIC4.03□□□□□ -1.76
COL28A1Q2UY09 AC124312.4-201ENST00000605533 310 ntBASIC4.03□□□□□ -1.76
COL28A1Q2UY09 Z98200.1-201ENST00000607298 470 ntBASIC4.03□□□□□ -1.76
COL28A1Q2UY09 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.03□□□□□ -1.76
COL28A1Q2UY09 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.03□□□□□ -1.76
COL28A1Q2UY09 ZNF285B-201ENST00000561698 1767 ntBASIC4.03□□□□□ -1.76
COL28A1Q2UY09 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL28A1Q2UY09 AL031985.3-201ENST00000565390 2449 ntBASIC4.03□□□□□ -1.76
COL28A1Q2UY09 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.03□□□□□ -1.76
COL28A1Q2UY09 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL28A1Q2UY09 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.03□□□□□ -1.76
COL28A1Q2UY09 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL28A1Q2UY09 AP002907.1-201ENST00000606361 1430 ntBASIC4.03□□□□□ -1.76
COL28A1Q2UY09 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
COL28A1Q2UY09 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL28A1Q2UY09 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC4.03□□□□□ -1.77
COL28A1Q2UY09 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
COL28A1Q2UY09 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.02□□□□□ -1.77
COL28A1Q2UY09 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
COL28A1Q2UY09 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
COL28A1Q2UY09 NUP58P1-201ENST00000502546 1738 ntBASIC4.02□□□□□ -1.77
COL28A1Q2UY09 AC087359.1-201ENST00000508335 1740 ntBASIC4.02□□□□□ -1.77
COL28A1Q2UY09 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC4.02□□□□□ -1.77
COL28A1Q2UY09 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
COL28A1Q2UY09 RPL23AP57-201ENST00000332361 466 ntBASIC4.02□□□□□ -1.77
COL28A1Q2UY09 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
COL28A1Q2UY09 Y_RNA.18-201ENST00000362461 102 ntBASIC4.02□□□□□ -1.77
COL28A1Q2UY09 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC4.02□□□□□ -1.77
COL28A1Q2UY09 RNU6-339P-201ENST00000384310 107 ntBASIC4.02□□□□□ -1.77
COL28A1Q2UY09 RNU11-4P-201ENST00000391149 133 ntBASIC4.02□□□□□ -1.77
COL28A1Q2UY09 AL583835.1-201ENST00000399570 407 ntBASIC4.02□□□□□ -1.77
COL28A1Q2UY09 MTND4LP20-201ENST00000402379 270 ntBASIC4.02□□□□□ -1.77
COL28A1Q2UY09 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL28A1Q2UY09 RN7SKP182-201ENST00000410772 298 ntBASIC4.02□□□□□ -1.77
COL28A1Q2UY09 SNORA74C-2-201ENST00000411179 201 ntBASIC4.02□□□□□ -1.77
COL28A1Q2UY09 RPL23AP39-201ENST00000415533 405 ntBASIC4.02□□□□□ -1.77
COL28A1Q2UY09 AC012065.2-201ENST00000421295 375 ntBASIC4.02□□□□□ -1.77
COL28A1Q2UY09 AC005517.2-201ENST00000424673 553 ntBASIC4.02□□□□□ -1.77
COL28A1Q2UY09 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.02□□□□□ -1.77
COL28A1Q2UY09 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC4.02□□□□□ -1.77
COL28A1Q2UY09 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.02□□□□□ -1.77
COL28A1Q2UY09 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC4.02□□□□□ -1.77
COL28A1Q2UY09 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.02□□□□□ -1.77
COL28A1Q2UY09 ABCF2P2-201ENST00000450549 296 ntBASIC4.02□□□□□ -1.77
COL28A1Q2UY09 AC097262.1-201ENST00000452559 548 ntBASIC4.02□□□□□ -1.77
COL28A1Q2UY09 RNU7-125P-201ENST00000458760 62 ntBASIC4.02□□□□□ -1.77
COL28A1Q2UY09 AC090013.1-201ENST00000485147 480 ntBASIC4.02□□□□□ -1.77
COL28A1Q2UY09 RPS26P15-201ENST00000488067 348 ntBASIC4.02□□□□□ -1.77
COL28A1Q2UY09 AHI1-208ENST00000488690 712 ntTSL 5 BASIC4.02□□□□□ -1.77
COL28A1Q2UY09 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC4.02□□□□□ -1.77
COL28A1Q2UY09 AC111000.2-201ENST00000507775 550 ntBASIC4.02□□□□□ -1.77
COL28A1Q2UY09 AC099522.1-202ENST00000514718 367 ntBASIC4.02□□□□□ -1.77
COL28A1Q2UY09 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC4.02□□□□□ -1.77
COL28A1Q2UY09 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC4.02□□□□□ -1.77
COL28A1Q2UY09 RN7SKP83-201ENST00000516512 178 ntBASIC4.02□□□□□ -1.77
COL28A1Q2UY09 RNU4-60P-201ENST00000517239 135 ntBASIC4.02□□□□□ -1.77
COL28A1Q2UY09 OR5M7P-201ENST00000526140 972 ntBASIC4.02□□□□□ -1.77
COL28A1Q2UY09 MIR5186-201ENST00000577504 120 ntBASIC4.02□□□□□ -1.77
COL28A1Q2UY09 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC4.02□□□□□ -1.77
COL28A1Q2UY09 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC4.02□□□□□ -1.77
COL28A1Q2UY09 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC4.02□□□□□ -1.77
COL28A1Q2UY09 AC005255.1-201ENST00000593748 216 ntBASIC4.02□□□□□ -1.77
COL28A1Q2UY09 DUXAP11-201ENST00000603858 526 ntBASIC4.02□□□□□ -1.77
COL28A1Q2UY09 AC025588.3-201ENST00000604182 274 ntBASIC4.02□□□□□ -1.77
COL28A1Q2UY09 CLPTM1LP1-201ENST00000604519 484 ntBASIC4.02□□□□□ -1.77
COL28A1Q2UY09 AL031667.3-201ENST00000620124 655 ntBASIC4.02□□□□□ -1.77
COL28A1Q2UY09 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC4.02□□□□□ -1.77
COL28A1Q2UY09 AL354798.1-201ENST00000622505 329 ntBASIC4.02□□□□□ -1.77
COL28A1Q2UY09 AC079228.1-201ENST00000624774 1049 ntBASIC4.02□□□□□ -1.77
COL28A1Q2UY09 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL28A1Q2UY09 AC090337.1-201ENST00000579651 2074 ntBASIC4.02□□□□□ -1.77
COL28A1Q2UY09 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL28A1Q2UY09 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL28A1Q2UY09 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.02□□□□□ -1.77
COL28A1Q2UY09 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
COL28A1Q2UY09 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
COL28A1Q2UY09 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL28A1Q2UY09 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL28A1Q2UY09 AC007390.2-201ENST00000606229 3803 ntBASIC4.01□□□□□ -1.77
COL28A1Q2UY09 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
COL28A1Q2UY09 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
COL28A1Q2UY09 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL28A1Q2UY09 RNU6-500P-201ENST00000362349 107 ntBASIC4.01□□□□□ -1.77
COL28A1Q2UY09 RNU1-14P-201ENST00000362759 152 ntBASIC4.01□□□□□ -1.77
COL28A1Q2UY09 RNU6-553P-201ENST00000364047 96 ntBASIC4.01□□□□□ -1.77
COL28A1Q2UY09 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC4.01□□□□□ -1.77
COL28A1Q2UY09 RNU6-253P-201ENST00000384730 105 ntBASIC4.01□□□□□ -1.77
COL28A1Q2UY09 RN7SKP167-201ENST00000411047 285 ntBASIC4.01□□□□□ -1.77
COL28A1Q2UY09 RPS15AP38-201ENST00000413110 372 ntBASIC4.01□□□□□ -1.77
COL28A1Q2UY09 RPS12P23-201ENST00000419579 400 ntBASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 140.5 ms