Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC3.3□□□□□ -1.88
BRCA1P38398 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC3.3□□□□□ -1.88
BRCA1P38398 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC3.3□□□□□ -1.88
BRCA1P38398 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC3.3□□□□□ -1.88
BRCA1P38398 IGKV2-36-201ENST00000519999 223 ntBASIC3.3□□□□□ -1.88
BRCA1P38398 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.3□□□□□ -1.88
BRCA1P38398 TRAV37-201ENST00000553906 342 ntBASIC3.3□□□□□ -1.88
BRCA1P38398 OR4U1P-201ENST00000554958 912 ntBASIC3.3□□□□□ -1.88
BRCA1P38398 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC3.3□□□□□ -1.88
BRCA1P38398 ABI1P1-201ENST00000603375 1120 ntBASIC3.3□□□□□ -1.88
BRCA1P38398 AL139286.1-201ENST00000604465 483 ntBASIC3.3□□□□□ -1.88
BRCA1P38398 AL139811.1-201ENST00000424779 2299 ntBASIC3.29□□□□□ -1.88
BRCA1P38398 RN7SKP285-201ENST00000410137 318 ntBASIC3.29□□□□□ -1.88
BRCA1P38398 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC3.29□□□□□ -1.88
BRCA1P38398 ZNF965P-201ENST00000432501 817 ntBASIC3.29□□□□□ -1.88
BRCA1P38398 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
BRCA1P38398 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC3.29□□□□□ -1.88
BRCA1P38398 HMGB3P12-201ENST00000438745 556 ntBASIC3.29□□□□□ -1.88
BRCA1P38398 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.29□□□□□ -1.88
BRCA1P38398 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.29□□□□□ -1.88
BRCA1P38398 AC025459.1-201ENST00000504072 156 ntBASIC3.29□□□□□ -1.88
BRCA1P38398 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
BRCA1P38398 YWHAZP1-201ENST00000556286 722 ntBASIC3.29□□□□□ -1.88
BRCA1P38398 AC009101.1-201ENST00000568135 242 ntBASIC3.29□□□□□ -1.88
BRCA1P38398 MIR4644-201ENST00000579929 84 ntBASIC3.29□□□□□ -1.88
BRCA1P38398 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.29□□□□□ -1.88
BRCA1P38398 AC242628.1-201ENST00000606810 391 ntBASIC3.29□□□□□ -1.88
BRCA1P38398 AC011374.2-201ENST00000607135 526 ntBASIC3.29□□□□□ -1.88
BRCA1P38398 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC3.29□□□□□ -1.88
BRCA1P38398 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
BRCA1P38398 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
BRCA1P38398 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
BRCA1P38398 MTCO1P39-201ENST00000426148 480 ntBASIC3.28□□□□□ -1.88
BRCA1P38398 OR2B8P-201ENST00000432841 938 ntBASIC3.28□□□□□ -1.88
BRCA1P38398 AC105402.2-201ENST00000438503 358 ntBASIC3.28□□□□□ -1.88
BRCA1P38398 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.28□□□□□ -1.88
BRCA1P38398 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
BRCA1P38398 HMGB3P30-201ENST00000457863 606 ntBASIC3.28□□□□□ -1.88
BRCA1P38398 AC146507.1-201ENST00000468335 354 ntBASIC3.28□□□□□ -1.88
BRCA1P38398 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC3.28□□□□□ -1.88
BRCA1P38398 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.28□□□□□ -1.88
BRCA1P38398 RN7SKP82-201ENST00000516786 223 ntBASIC3.28□□□□□ -1.88
BRCA1P38398 AL391156.1-201ENST00000554965 554 ntBASIC3.28□□□□□ -1.88
BRCA1P38398 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.28□□□□□ -1.88
BRCA1P38398 AC004925.1-201ENST00000624256 2706 ntBASIC3.28□□□□□ -1.88
BRCA1P38398 AL133412.1-201ENST00000380194 2992 ntBASIC3.28□□□□□ -1.88
BRCA1P38398 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
BRCA1P38398 OR11H5P-202ENST00000641612 1325 ntBASIC3.28□□□□□ -1.88
BRCA1P38398 SNORD62.1-201ENST00000362541 86 ntBASIC3.28□□□□□ -1.88
BRCA1P38398 SNORA46-201ENST00000384762 135 ntBASIC3.28□□□□□ -1.88
BRCA1P38398 MIR518C-201ENST00000384822 101 ntBASIC3.28□□□□□ -1.88
BRCA1P38398 RFESDP1-201ENST00000422350 461 ntBASIC3.28□□□□□ -1.88
BRCA1P38398 GTF2IP23-201ENST00000423746 351 ntBASIC3.28□□□□□ -1.88
BRCA1P38398 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
BRCA1P38398 AL513043.1-201ENST00000439124 535 ntBASIC3.28□□□□□ -1.88
BRCA1P38398 FAM103A2P-201ENST00000444122 354 ntBASIC3.28□□□□□ -1.88
BRCA1P38398 CACYBPP2-201ENST00000453625 678 ntBASIC3.28□□□□□ -1.88
BRCA1P38398 RPS4XP6-201ENST00000477670 797 ntBASIC3.28□□□□□ -1.88
BRCA1P38398 GAPDHP39-201ENST00000481866 979 ntBASIC3.28□□□□□ -1.88
BRCA1P38398 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC3.28□□□□□ -1.88
BRCA1P38398 OR5H5P-201ENST00000503164 928 ntBASIC3.28□□□□□ -1.88
BRCA1P38398 SNORA48.9-201ENST00000516419 162 ntBASIC3.28□□□□□ -1.88
BRCA1P38398 AC104027.1-201ENST00000521887 300 ntBASIC3.28□□□□□ -1.88
BRCA1P38398 AC139769.3-201ENST00000618383 175 ntBASIC3.28□□□□□ -1.88
BRCA1P38398 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC3.28□□□□□ -1.88
BRCA1P38398 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
BRCA1P38398 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
BRCA1P38398 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.28□□□□□ -1.88
BRCA1P38398 USP44-208ENST00000552440 1818 ntTSL 5 BASIC3.27□□□□□ -1.89
BRCA1P38398 RNU6-185P-201ENST00000384421 107 ntBASIC3.27□□□□□ -1.89
BRCA1P38398 RNU6-482P-201ENST00000391068 107 ntBASIC3.27□□□□□ -1.89
BRCA1P38398 Z98742.3-201ENST00000418637 326 ntBASIC3.27□□□□□ -1.89
BRCA1P38398 YPEL5P1-201ENST00000419731 367 ntBASIC3.27□□□□□ -1.89
BRCA1P38398 FCF1P1-201ENST00000432690 571 ntBASIC3.27□□□□□ -1.89
BRCA1P38398 AL162388.1-201ENST00000450912 352 ntBASIC3.27□□□□□ -1.89
BRCA1P38398 AC006539.3-201ENST00000454258 129 ntBASIC3.27□□□□□ -1.89
BRCA1P38398 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC3.27□□□□□ -1.89
BRCA1P38398 AP002345.1-201ENST00000456493 928 ntBASIC3.27□□□□□ -1.89
BRCA1P38398 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC3.27□□□□□ -1.89
BRCA1P38398 FAM172BP-201ENST00000487497 1089 ntBASIC3.27□□□□□ -1.89
BRCA1P38398 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.27□□□□□ -1.89
BRCA1P38398 RNU6-1231P-201ENST00000517185 103 ntBASIC3.27□□□□□ -1.89
BRCA1P38398 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC3.27□□□□□ -1.89
BRCA1P38398 PTP4A1P6-201ENST00000531034 478 ntBASIC3.27□□□□□ -1.89
BRCA1P38398 ERP27-202ENST00000540097 993 ntTSL 2 BASIC3.27□□□□□ -1.89
BRCA1P38398 AC044913.1-201ENST00000557200 430 ntBASIC3.27□□□□□ -1.89
BRCA1P38398 AC105429.2-201ENST00000610567 517 ntBASIC3.27□□□□□ -1.89
BRCA1P38398 AL591516.1-201ENST00000611326 274 ntBASIC3.27□□□□□ -1.89
BRCA1P38398 U6.48-201ENST00000618523 106 ntBASIC3.27□□□□□ -1.89
BRCA1P38398 AC092628.2-201ENST00000622492 339 ntBASIC3.27□□□□□ -1.89
BRCA1P38398 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC3.27□□□□□ -1.89
BRCA1P38398 MIR4496-201ENST00000635896 61 ntBASIC3.27□□□□□ -1.89
BRCA1P38398 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
BRCA1P38398 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.27□□□□□ -1.89
BRCA1P38398 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
BRCA1P38398 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
BRCA1P38398 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.27□□□□□ -1.89
BRCA1P38398 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
BRCA1P38398 5S_rRNA.2-201ENST00000391293 112 ntBASIC3.26□□□□□ -1.89
BRCA1P38398 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 111.9 ms