Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
SDC1P18827 ZNF29P-201ENST00000225587 168 ntBASIC3.23□□□□□ -1.89
SDC1P18827 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
SDC1P18827 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
SDC1P18827 RNU5D-1-201ENST00000363299 116 ntBASIC3.23□□□□□ -1.89
SDC1P18827 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.23□□□□□ -1.89
SDC1P18827 RNU6-730P-201ENST00000383954 104 ntBASIC3.23□□□□□ -1.89
SDC1P18827 SNORA5A-201ENST00000384111 134 ntBASIC3.23□□□□□ -1.89
SDC1P18827 SNORA51.6-201ENST00000384151 125 ntBASIC3.23□□□□□ -1.89
SDC1P18827 MT-TC-201ENST00000387405 66 ntBASIC3.23□□□□□ -1.89
SDC1P18827 SNORA57.1-201ENST00000391227 145 ntBASIC3.23□□□□□ -1.89
SDC1P18827 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
SDC1P18827 SKINT1L-201ENST00000401057 817 ntBASIC3.23□□□□□ -1.89
SDC1P18827 RNU2-28P-201ENST00000410457 189 ntBASIC3.23□□□□□ -1.89
SDC1P18827 SYF2P2-201ENST00000417620 583 ntBASIC3.23□□□□□ -1.89
SDC1P18827 RPS3AP37-201ENST00000419176 745 ntBASIC3.23□□□□□ -1.89
SDC1P18827 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
SDC1P18827 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
SDC1P18827 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC3.23□□□□□ -1.89
SDC1P18827 USP9YP22-201ENST00000438971 294 ntBASIC3.23□□□□□ -1.89
SDC1P18827 AL034418.1-201ENST00000448675 860 ntBASIC3.23□□□□□ -1.89
SDC1P18827 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC3.23□□□□□ -1.89
SDC1P18827 RPS20P32-201ENST00000456044 356 ntBASIC3.23□□□□□ -1.89
SDC1P18827 HMGN1P18-201ENST00000457642 277 ntBASIC3.23□□□□□ -1.89
SDC1P18827 PNPLA4P1-201ENST00000458328 305 ntBASIC3.23□□□□□ -1.89
SDC1P18827 PLGLA-201ENST00000465668 449 ntBASIC3.23□□□□□ -1.89
SDC1P18827 RN7SL330P-201ENST00000469709 307 ntBASIC3.23□□□□□ -1.89
SDC1P18827 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC3.23□□□□□ -1.89
SDC1P18827 AC112198.1-201ENST00000505369 1220 ntBASIC3.23□□□□□ -1.89
SDC1P18827 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC3.23□□□□□ -1.89
SDC1P18827 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC3.23□□□□□ -1.89
SDC1P18827 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
SDC1P18827 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC3.23□□□□□ -1.89
SDC1P18827 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC3.23□□□□□ -1.89
SDC1P18827 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC3.23□□□□□ -1.89
SDC1P18827 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.23□□□□□ -1.89
SDC1P18827 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC3.23□□□□□ -1.89
SDC1P18827 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC3.23□□□□□ -1.89
SDC1P18827 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
SDC1P18827 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.23□□□□□ -1.89
SDC1P18827 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
SDC1P18827 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC3.23□□□□□ -1.89
SDC1P18827 AC004024.1-201ENST00000549244 247 ntBASIC3.23□□□□□ -1.89
SDC1P18827 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.23□□□□□ -1.89
SDC1P18827 AC107954.1-201ENST00000565906 727 ntBASIC3.23□□□□□ -1.89
SDC1P18827 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC3.23□□□□□ -1.89
SDC1P18827 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC3.23□□□□□ -1.89
SDC1P18827 AC007687.1-201ENST00000602704 304 ntBASIC3.23□□□□□ -1.89
SDC1P18827 MTND3P19-201ENST00000603825 345 ntBASIC3.23□□□□□ -1.89
SDC1P18827 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC3.23□□□□□ -1.89
SDC1P18827 AP001521.1-201ENST00000609150 300 ntBASIC3.23□□□□□ -1.89
SDC1P18827 AC009318.4-201ENST00000620496 486 ntBASIC3.23□□□□□ -1.89
SDC1P18827 AC073348.1-201ENST00000623002 331 ntBASIC3.23□□□□□ -1.89
SDC1P18827 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC3.23□□□□□ -1.89
SDC1P18827 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
SDC1P18827 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.23□□□□□ -1.89
SDC1P18827 USP8P1-201ENST00000494673 3183 ntBASIC3.23□□□□□ -1.89
SDC1P18827 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
SDC1P18827 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
SDC1P18827 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
SDC1P18827 OFD1P5Y-201ENST00000447585 2590 ntBASIC3.22□□□□□ -1.89
SDC1P18827 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SDC1P18827 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
SDC1P18827 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SDC1P18827 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
SDC1P18827 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
SDC1P18827 RNU6-989P-201ENST00000362756 107 ntBASIC3.22□□□□□ -1.89
SDC1P18827 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SDC1P18827 AL359837.1-201ENST00000381357 287 ntBASIC3.22□□□□□ -1.89
SDC1P18827 Y_RNA.408-201ENST00000383987 102 ntBASIC3.22□□□□□ -1.89
SDC1P18827 SNORD17-201ENST00000390930 237 ntBASIC3.22□□□□□ -1.89
SDC1P18827 RNA5SP56-201ENST00000410277 118 ntBASIC3.22□□□□□ -1.89
SDC1P18827 RN7SKP111-201ENST00000410349 271 ntBASIC3.22□□□□□ -1.89
SDC1P18827 RNU2-42P-201ENST00000410697 113 ntBASIC3.22□□□□□ -1.89
SDC1P18827 MTATP6P20-201ENST00000414147 562 ntBASIC3.22□□□□□ -1.89
SDC1P18827 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC3.22□□□□□ -1.89
SDC1P18827 FNDC3CP-201ENST00000420795 1155 ntBASIC3.22□□□□□ -1.89
SDC1P18827 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC3.22□□□□□ -1.89
SDC1P18827 GTF2IP23-201ENST00000423746 351 ntBASIC3.22□□□□□ -1.89
SDC1P18827 NANOGP5-201ENST00000424456 877 ntBASIC3.22□□□□□ -1.89
SDC1P18827 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC3.22□□□□□ -1.89
SDC1P18827 USP9YP31-201ENST00000431405 881 ntBASIC3.22□□□□□ -1.89
SDC1P18827 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC3.22□□□□□ -1.89
SDC1P18827 AC004022.1-201ENST00000447766 1066 ntBASIC3.22□□□□□ -1.89
SDC1P18827 RFC5P1-201ENST00000454419 874 ntBASIC3.22□□□□□ -1.89
SDC1P18827 CFTRP1-201ENST00000456646 183 ntBASIC3.22□□□□□ -1.89
SDC1P18827 snoU13.3-201ENST00000459441 104 ntBASIC3.22□□□□□ -1.89
SDC1P18827 RPL9P32-201ENST00000464118 620 ntBASIC3.22□□□□□ -1.89
SDC1P18827 RN7SL442P-201ENST00000473804 320 ntBASIC3.22□□□□□ -1.89
SDC1P18827 AC025518.1-201ENST00000479856 347 ntBASIC3.22□□□□□ -1.89
SDC1P18827 AC134050.1-201ENST00000495088 933 ntBASIC3.22□□□□□ -1.89
SDC1P18827 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC3.22□□□□□ -1.89
SDC1P18827 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC3.22□□□□□ -1.89
SDC1P18827 MTCO1P30-201ENST00000515244 580 ntBASIC3.22□□□□□ -1.89
SDC1P18827 RN7SKP31-201ENST00000516354 278 ntBASIC3.22□□□□□ -1.89
SDC1P18827 RNU4ATAC10P-201ENST00000516967 122 ntBASIC3.22□□□□□ -1.89
SDC1P18827 RNU6-1261P-201ENST00000517194 104 ntBASIC3.22□□□□□ -1.89
SDC1P18827 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.22□□□□□ -1.89
SDC1P18827 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.22□□□□□ -1.89
SDC1P18827 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 132.7 ms