Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC3.03□□□□□ -1.92
APOEP02649 AL606490.7-201ENST00000433136 191 ntBASIC3.03□□□□□ -1.92
APOEP02649 RPS20P5-201ENST00000434808 360 ntBASIC3.03□□□□□ -1.92
APOEP02649 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.03□□□□□ -1.92
APOEP02649 RPL23AP20-201ENST00000447965 421 ntBASIC3.03□□□□□ -1.92
APOEP02649 AL162389.1-201ENST00000449233 177 ntBASIC3.03□□□□□ -1.92
APOEP02649 NF1P3-201ENST00000457709 450 ntBASIC3.03□□□□□ -1.92
APOEP02649 RPS3AP14-201ENST00000483907 780 ntBASIC3.03□□□□□ -1.92
APOEP02649 MTND3P6-201ENST00000485242 339 ntBASIC3.03□□□□□ -1.92
APOEP02649 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.03□□□□□ -1.92
APOEP02649 DSTNP2-201ENST00000504533 515 ntBASIC3.03□□□□□ -1.92
APOEP02649 KLHL2P1-201ENST00000508691 521 ntBASIC3.03□□□□□ -1.92
APOEP02649 FABP5P6-201ENST00000510588 409 ntBASIC3.03□□□□□ -1.92
APOEP02649 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC3.03□□□□□ -1.92
APOEP02649 AP003717.3-201ENST00000544832 1180 ntBASIC3.03□□□□□ -1.92
APOEP02649 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC3.03□□□□□ -1.92
APOEP02649 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.03□□□□□ -1.92
APOEP02649 AC093014.1-201ENST00000548926 724 ntBASIC3.03□□□□□ -1.92
APOEP02649 CR383656.14-201ENST00000551951 406 ntBASIC3.03□□□□□ -1.92
APOEP02649 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.03□□□□□ -1.92
APOEP02649 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC3.03□□□□□ -1.92
APOEP02649 AL359535.1-201ENST00000612100 1087 ntBASIC3.03□□□□□ -1.92
APOEP02649 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC3.03□□□□□ -1.92
APOEP02649 AC096644.4-201ENST00000563417 2912 ntBASIC3.03□□□□□ -1.92
APOEP02649 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
APOEP02649 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
APOEP02649 AL355596.1-201ENST00000565399 3996 ntBASIC3.03□□□□□ -1.92
APOEP02649 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC3.03□□□□□ -1.92
APOEP02649 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.03□□□□□ -1.93
APOEP02649 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
APOEP02649 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.02□□□□□ -1.93
APOEP02649 RPL21P75-201ENST00000396599 483 ntBASIC3.02□□□□□ -1.93
APOEP02649 RPL21P28-201ENST00000401418 483 ntBASIC3.02□□□□□ -1.93
APOEP02649 AL592114.1-201ENST00000403842 483 ntBASIC3.02□□□□□ -1.93
APOEP02649 RPL7P8-201ENST00000411964 730 ntBASIC3.02□□□□□ -1.93
APOEP02649 MTCO3P4-201ENST00000419236 787 ntBASIC3.02□□□□□ -1.93
APOEP02649 RNF19BPX-201ENST00000426224 625 ntBASIC3.02□□□□□ -1.93
APOEP02649 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC3.02□□□□□ -1.93
APOEP02649 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.02□□□□□ -1.93
APOEP02649 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC3.02□□□□□ -1.93
APOEP02649 NECAP1P2-201ENST00000455668 727 ntBASIC3.02□□□□□ -1.93
APOEP02649 RPL21P39-201ENST00000463605 483 ntBASIC3.02□□□□□ -1.93
APOEP02649 AC011979.1-201ENST00000472300 483 ntBASIC3.02□□□□□ -1.93
APOEP02649 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
APOEP02649 RPL21P93-201ENST00000480465 489 ntBASIC3.02□□□□□ -1.93
APOEP02649 AC233702.1-201ENST00000482905 502 ntBASIC3.02□□□□□ -1.93
APOEP02649 AC087190.1-201ENST00000484462 480 ntBASIC3.02□□□□□ -1.93
APOEP02649 AC093591.1-201ENST00000491435 481 ntBASIC3.02□□□□□ -1.93
APOEP02649 RPL21P16-201ENST00000495531 483 ntBASIC3.02□□□□□ -1.93
APOEP02649 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC3.02□□□□□ -1.93
APOEP02649 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.02□□□□□ -1.93
APOEP02649 SNORD59.2-201ENST00000516873 68 ntBASIC3.02□□□□□ -1.93
APOEP02649 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC3.02□□□□□ -1.93
APOEP02649 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC3.02□□□□□ -1.93
APOEP02649 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC3.02□□□□□ -1.93
APOEP02649 AC083760.1-201ENST00000589621 670 ntBASIC3.02□□□□□ -1.93
APOEP02649 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC3.02□□□□□ -1.93
APOEP02649 AC069234.5-201ENST00000611056 416 ntBASIC3.02□□□□□ -1.93
APOEP02649 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.02□□□□□ -1.93
APOEP02649 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.02□□□□□ -1.93
APOEP02649 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.02□□□□□ -1.93
APOEP02649 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.01□□□□□ -1.93
APOEP02649 AC123912.3-201ENST00000600907 1367 ntBASIC3.01□□□□□ -1.93
APOEP02649 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC3.01□□□□□ -1.93
APOEP02649 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.01□□□□□ -1.93
APOEP02649 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
APOEP02649 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
APOEP02649 U3.42-201ENST00000408746 214 ntBASIC3.01□□□□□ -1.93
APOEP02649 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.01□□□□□ -1.93
APOEP02649 Z77249.1-201ENST00000444622 1175 ntBASIC3.01□□□□□ -1.93
APOEP02649 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
APOEP02649 RPS29P26-201ENST00000477483 171 ntBASIC3.01□□□□□ -1.93
APOEP02649 AC016065.2-201ENST00000514530 444 ntBASIC3.01□□□□□ -1.93
APOEP02649 RNU6-1073P-201ENST00000517182 106 ntBASIC3.01□□□□□ -1.93
APOEP02649 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC3.01□□□□□ -1.93
APOEP02649 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC3.01□□□□□ -1.93
APOEP02649 POLR2KP1-201ENST00000553226 168 ntBASIC3.01□□□□□ -1.93
APOEP02649 AC012119.1-201ENST00000603184 222 ntBASIC3.01□□□□□ -1.93
APOEP02649 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC3.01□□□□□ -1.93
APOEP02649 AC107871.2-201ENST00000612894 502 ntBASIC3.01□□□□□ -1.93
APOEP02649 AC004696.1-201ENST00000614345 607 ntBASIC3.01□□□□□ -1.93
APOEP02649 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
APOEP02649 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
APOEP02649 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.01□□□□□ -1.93
APOEP02649 MTCO1P8-201ENST00000416914 1523 ntBASIC3□□□□□ -1.93
APOEP02649 RNU6-629P-201ENST00000384061 103 ntBASIC3□□□□□ -1.93
APOEP02649 RNU6-98P-201ENST00000384173 107 ntBASIC3□□□□□ -1.93
APOEP02649 NDUFB4P4-201ENST00000404822 243 ntBASIC3□□□□□ -1.93
APOEP02649 RNA5SP492-201ENST00000411330 114 ntBASIC3□□□□□ -1.93
APOEP02649 AL451074.5-201ENST00000415894 435 ntBASIC3□□□□□ -1.93
APOEP02649 SSXP9-201ENST00000417503 292 ntBASIC3□□□□□ -1.93
APOEP02649 RPL21P66-201ENST00000426566 466 ntBASIC3□□□□□ -1.93
APOEP02649 AL139132.1-201ENST00000431587 344 ntBASIC3□□□□□ -1.93
APOEP02649 HMGB1P48-201ENST00000446155 598 ntBASIC3□□□□□ -1.93
APOEP02649 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC3□□□□□ -1.93
APOEP02649 NIPA2P5-201ENST00000452282 464 ntBASIC3□□□□□ -1.93
APOEP02649 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3□□□□□ -1.93
APOEP02649 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC3□□□□□ -1.93
APOEP02649 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC3□□□□□ -1.93
APOEP02649 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 189.6 ms