Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 RHOT1P3-201ENST00000436571 331 ntBASIC4.36□□□□□ -1.71
VSX1Q9NZR4 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 USP9YP15-201ENST00000442391 422 ntBASIC4.36□□□□□ -1.71
VSX1Q9NZR4 AL671855.1-201ENST00000446875 1203 ntBASIC4.36□□□□□ -1.71
VSX1Q9NZR4 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 AC022364.2-201ENST00000457963 554 ntBASIC4.36□□□□□ -1.71
VSX1Q9NZR4 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.36□□□□□ -1.71
VSX1Q9NZR4 HMGB1P21-201ENST00000502313 581 ntBASIC4.36□□□□□ -1.71
VSX1Q9NZR4 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 HIGD1AP14-201ENST00000507617 282 ntBASIC4.36□□□□□ -1.71
VSX1Q9NZR4 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 RNA5SP497-201ENST00000516081 97 ntBASIC4.36□□□□□ -1.71
VSX1Q9NZR4 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 AC092490.3-201ENST00000545370 572 ntBASIC4.36□□□□□ -1.71
VSX1Q9NZR4 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 AL359212.1-201ENST00000556608 614 ntBASIC4.36□□□□□ -1.71
VSX1Q9NZR4 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC4.36□□□□□ -1.71
VSX1Q9NZR4 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 AC009268.2-201ENST00000621925 457 ntBASIC4.36□□□□□ -1.71
VSX1Q9NZR4 AC015871.5-202ENST00000623252 701 ntBASIC4.36□□□□□ -1.71
VSX1Q9NZR4 AC139792.3-201ENST00000623525 224 ntBASIC4.36□□□□□ -1.71
VSX1Q9NZR4 AL353662.3-201ENST00000625131 237 ntBASIC4.36□□□□□ -1.71
VSX1Q9NZR4 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 IQCB2P-201ENST00000401788 1633 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 AL359922.3-201ENST00000624779 1670 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 RPL23P2-201ENST00000320371 421 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 RNU6-1097P-201ENST00000363586 107 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 RNU6-534P-201ENST00000364877 106 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 RNA5SP455-201ENST00000365190 119 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 SNORD82-201ENST00000365530 70 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 AL357515.1-201ENST00000402967 542 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 RNA5SP345-201ENST00000410646 108 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 RNU2-41P-201ENST00000410991 178 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 RNU6-195P-201ENST00000411352 109 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 AC078974.1-201ENST00000411597 223 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 HMGB3P20-201ENST00000417997 600 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 AL355433.1-201ENST00000422804 300 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 RGS17P1-201ENST00000423358 553 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 AC119618.1-201ENST00000434191 222 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 HMGB3P12-201ENST00000438745 556 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 AL049734.2-201ENST00000441066 616 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 AL163193.1-201ENST00000444895 788 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 CYCSP34-201ENST00000458172 304 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 RPS18P6-201ENST00000476880 458 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 MTCYBP18-201ENST00000501056 747 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 STMN1P2-201ENST00000508435 439 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 AC046134.1-201ENST00000514454 666 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 RN7SL176P-201ENST00000580352 264 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 SNORA74C-1-201ENST00000580726 201 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 MIR4691-201ENST00000583764 85 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 AC068790.3-201ENST00000602988 553 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 AL162413.1-201ENST00000603198 110 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 AC008966.2-201ENST00000606157 453 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 AL445222.1-201ENST00000607259 628 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 AC104985.2-201ENST00000620598 500 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 AP005264.7-201ENST00000625003 745 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 113.5 ms