Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 AC079781.2-201ENST00000446424 169 ntBASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 AC140076.1-201ENST00000449897 361 ntBASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 AC093278.1-201ENST00000494700 600 ntBASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 SNORD60.2-201ENST00000516883 86 ntBASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 AP000859.1-201ENST00000525536 307 ntBASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 MIR4504-201ENST00000577413 92 ntBASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 AC022884.2-201ENST00000578535 580 ntBASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 AC135507.2-201ENST00000612443 309 ntBASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 AC123768.4-201ENST00000616244 701 ntBASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 RNA5SP439-201ENST00000617595 124 ntBASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 AC114546.3-201ENST00000623582 1734 ntBASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
CCDC87Q9NVE4 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC87Q9NVE4 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC6.2□□□□□ -1.42
CCDC87Q9NVE4 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC87Q9NVE4 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
CCDC87Q9NVE4 SNORD81.2-201ENST00000365153 76 ntBASIC6.2□□□□□ -1.42
CCDC87Q9NVE4 RNU6-1158P-201ENST00000391167 107 ntBASIC6.2□□□□□ -1.42
CCDC87Q9NVE4 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC87Q9NVE4 RPL12P9-201ENST00000412942 488 ntBASIC6.2□□□□□ -1.42
CCDC87Q9NVE4 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC6.2□□□□□ -1.42
CCDC87Q9NVE4 USP9YP20-201ENST00000419224 558 ntBASIC6.2□□□□□ -1.42
CCDC87Q9NVE4 ELOCP4-201ENST00000420090 333 ntBASIC6.2□□□□□ -1.42
CCDC87Q9NVE4 RGS17P1-201ENST00000423358 553 ntBASIC6.2□□□□□ -1.42
CCDC87Q9NVE4 AL365400.1-201ENST00000431854 640 ntBASIC6.2□□□□□ -1.42
CCDC87Q9NVE4 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC6.2□□□□□ -1.42
CCDC87Q9NVE4 AC090602.1-201ENST00000469695 252 ntBASIC6.2□□□□□ -1.42
CCDC87Q9NVE4 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC6.2□□□□□ -1.42
CCDC87Q9NVE4 AC022616.3-201ENST00000523940 148 ntBASIC6.2□□□□□ -1.42
CCDC87Q9NVE4 DERA-209ENST00000532964 854 ntTSL 5 BASIC6.2□□□□□ -1.42
CCDC87Q9NVE4 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC6.2□□□□□ -1.42
CCDC87Q9NVE4 AC243972.3-201ENST00000539655 198 ntBASIC6.2□□□□□ -1.42
CCDC87Q9NVE4 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC6.2□□□□□ -1.42
CCDC87Q9NVE4 AC133555.2-201ENST00000550213 292 ntBASIC6.2□□□□□ -1.42
CCDC87Q9NVE4 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC6.2□□□□□ -1.42
CCDC87Q9NVE4 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC6.2□□□□□ -1.42
CCDC87Q9NVE4 MTCO3P13-201ENST00000577757 781 ntBASIC6.2□□□□□ -1.42
CCDC87Q9NVE4 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC6.2□□□□□ -1.42
CCDC87Q9NVE4 AC023575.1-201ENST00000580510 358 ntBASIC6.2□□□□□ -1.42
CCDC87Q9NVE4 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC6.2□□□□□ -1.42
CCDC87Q9NVE4 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC87Q9NVE4 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
CCDC87Q9NVE4 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC6.2□□□□□ -1.42
CCDC87Q9NVE4 AL121839.2-201ENST00000565058 6943 ntBASIC6.2□□□□□ -1.42
CCDC87Q9NVE4 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 AC093775.1-201ENST00000624154 1868 ntBASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 IQCB2P-201ENST00000401788 1633 ntBASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 RNU4-79P-201ENST00000362764 141 ntBASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 U3.32-201ENST00000408116 212 ntBASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 AC073136.2-201ENST00000417282 849 ntBASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 RPL31P45-201ENST00000419532 356 ntBASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 RBM6-203ENST00000421682 684 ntTSL 2 BASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 AC108734.1-201ENST00000439549 399 ntBASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 AC010618.1-201ENST00000469924 477 ntBASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 RNU6-1153P-201ENST00000516760 105 ntBASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 AC107934.1-201ENST00000522215 217 ntBASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 OR4R1P-201ENST00000529879 463 ntBASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 AL049839.1-201ENST00000556151 657 ntBASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 AC090615.1-201ENST00000577519 154 ntBASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 AC010928.3-201ENST00000587712 541 ntBASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 AC005191.1-201ENST00000603950 358 ntBASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 AL132765.2-201ENST00000610812 351 ntBASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 AC000123.2-201ENST00000623124 461 ntBASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 MTND5P33-201ENST00000571250 1450 ntBASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 AL592148.3-201ENST00000608771 2646 ntBASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 AC011978.2-201ENST00000569835 2054 ntBASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC87Q9NVE4 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 83.8 ms