Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 KCTD9P3-201ENST00000434597 1169 ntBASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 SETD6P1-201ENST00000444575 317 ntBASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 AC104073.1-201ENST00000451988 151 ntBASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 ANKRD26P4-201ENST00000455755 950 ntBASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 AL139824.2-201ENST00000458731 1095 ntBASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 SNORD108-201ENST00000459332 71 ntBASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 RN7SKP18-201ENST00000516005 275 ntBASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 AC026407.1-201ENST00000518369 204 ntBASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 AC105185.1-201ENST00000518705 535 ntBASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 STX3-204ENST00000530221 534 ntTSL 5 BASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 OR8L1P-201ENST00000534005 955 ntBASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 AL354943.1-201ENST00000572103 781 ntBASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 AC244505.7-201ENST00000599675 272 ntBASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 VN1R82P-201ENST00000601481 356 ntBASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 AC068790.5-201ENST00000602741 355 ntBASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 DPRXP5-201ENST00000604662 539 ntBASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 AL450489.1-201ENST00000612071 468 ntBASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 AC009464.1-201ENST00000615731 469 ntBASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 MESTIT1_2.1-201ENST00000616328 235 ntBASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 AL357559.1-201ENST00000622228 274 ntBASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 MIR34B-201ENST00000385076 84 ntBASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 AL450338.1-201ENST00000407987 512 ntBASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 RNU2-28P-201ENST00000410457 189 ntBASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 AL008987.1-201ENST00000415528 237 ntBASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 TIMM9P2-201ENST00000419324 266 ntBASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 MTND2P16-201ENST00000419987 799 ntBASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 NANOGP6-201ENST00000429190 847 ntBASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 RPL7P28-201ENST00000437739 740 ntBASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 MTCO2P6-201ENST00000463134 685 ntBASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 RPL7P18-201ENST00000478965 734 ntBASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 AC004263.1-201ENST00000479327 332 ntBASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 AC106707.2-201ENST00000484182 374 ntBASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 HMGB1P28-201ENST00000507778 552 ntBASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 AP001636.2-201ENST00000525517 696 ntBASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 SLC2A13P1-201ENST00000531560 322 ntBASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 PDCL2P2-201ENST00000533651 189 ntBASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 AC092470.1-201ENST00000546187 132 ntBASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 DUXAP1-201ENST00000556632 463 ntBASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 Z99289.3-201ENST00000605586 594 ntBASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 AP003392.5-201ENST00000607857 415 ntBASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 AL159169.3-201ENST00000608871 561 ntBASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 TUSC7.1-201ENST00000610969 165 ntBASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 AC087683.2-201ENST00000611384 326 ntBASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 AC008083.4-201ENST00000615076 444 ntBASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 AC231759.1-201ENST00000616455 597 ntBASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 AC009159.2-201ENST00000617603 606 ntBASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC3Q9BQI4 NMD3P1-201ENST00000439704 1488 ntBASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 MTCO1P12-201ENST00000414273 1543 ntBASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms