Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC3.44□□□□□ -1.86
NKX3-1Q99801 MTCO1P23-201ENST00000415223 1526 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
NKX3-1Q99801 SAGE4P-201ENST00000442271 3381 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC3.44□□□□□ -1.86
NKX3-1Q99801 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.44□□□□□ -1.86
NKX3-1Q99801 AC012321.1-201ENST00000561622 1588 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 NMD3P1-201ENST00000439704 1488 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
NKX3-1Q99801 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
NKX3-1Q99801 U3.15-201ENST00000365398 212 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
NKX3-1Q99801 RNU6-730P-201ENST00000383954 104 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 AL138878.1-201ENST00000405131 347 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 RN7SKP56-201ENST00000410513 331 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC3.44□□□□□ -1.86
NKX3-1Q99801 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
NKX3-1Q99801 AL365203.2-201ENST00000423444 196 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 OR5BE1P-201ENST00000425977 939 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 OFD1P12Y-201ENST00000427963 1207 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.44□□□□□ -1.86
NKX3-1Q99801 BMS1P19-201ENST00000433925 393 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 AC096638.2-201ENST00000434965 711 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 TBCAP1-201ENST00000436520 327 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 RPS11P1-201ENST00000451072 473 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 RPL23AP35-201ENST00000451906 501 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC3.44□□□□□ -1.86
NKX3-1Q99801 RNU7-136P-201ENST00000458819 69 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 RPL7P19-201ENST00000469948 618 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 BZW1P2-201ENST00000473537 826 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 RPS3AP43-201ENST00000479743 781 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 RPL7P24-201ENST00000493052 752 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.44□□□□□ -1.86
NKX3-1Q99801 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC3.44□□□□□ -1.86
NKX3-1Q99801 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC3.44□□□□□ -1.86
NKX3-1Q99801 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC3.44□□□□□ -1.86
NKX3-1Q99801 AC026402.1-201ENST00000513642 170 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC3.44□□□□□ -1.86
NKX3-1Q99801 RNU4ATAC10P-201ENST00000516967 122 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC3.44□□□□□ -1.86
NKX3-1Q99801 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC3.44□□□□□ -1.86
NKX3-1Q99801 AL139174.1-201ENST00000531489 886 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 OR7K1P-201ENST00000546439 926 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 AC007424.1-203ENST00000554613 687 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 HSPE1P3-201ENST00000559254 309 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 AC002400.1-201ENST00000569310 726 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 AC020914.6-201ENST00000594327 272 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 AC110741.2-201ENST00000605278 268 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 AL513477.2-201ENST00000607858 568 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 VIS1.1-201ENST00000610517 203 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 AC105429.2-201ENST00000610567 517 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 MIR486-1-201ENST00000612171 68 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC3.44□□□□□ -1.86
NKX3-1Q99801 AL603755.1-201ENST00000619504 163 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
NKX3-1Q99801 AC092192.1-201ENST00000633154 1018 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.44□□□□□ -1.86
NKX3-1Q99801 OR5BE1P-202ENST00000641168 1176 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
NKX3-1Q99801 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
NKX3-1Q99801 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
NKX3-1Q99801 AC087359.1-201ENST00000508335 1740 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 AC026951.1-201ENST00000559530 2459 ntBASIC3.44□□□□□ -1.86
NKX3-1Q99801 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
NKX3-1Q99801 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.44□□□□□ -1.86
NKX3-1Q99801 BDP1P-201ENST00000582658 1990 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.43□□□□□ -1.86
NKX3-1Q99801 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC3.43□□□□□ -1.86
NKX3-1Q99801 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.43□□□□□ -1.86
NKX3-1Q99801 ZNF33CP-201ENST00000432492 2030 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.43□□□□□ -1.86
NKX3-1Q99801 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
NKX3-1Q99801 MIR423-201ENST00000362201 94 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 RNU6-433P-201ENST00000363216 104 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 RNU6-553P-201ENST00000364047 96 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 SNORD116-2-201ENST00000384274 95 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 SNORD116-6-201ENST00000384711 96 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 RNU6-952P-201ENST00000391164 108 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 MTND4LP20-201ENST00000402379 270 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC3.43□□□□□ -1.86
NKX3-1Q99801 Z98941.1-201ENST00000407764 100 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 RN7SKP263-201ENST00000411194 309 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 HSPE1P12-201ENST00000412576 301 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.43□□□□□ -1.86
NKX3-1Q99801 FNDC3CP-201ENST00000420795 1155 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 OFD1P18Y-201ENST00000420889 959 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 MTND4P20-201ENST00000424125 869 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
NKX3-1Q99801 ZYG11AP1-201ENST00000430329 837 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.43□□□□□ -1.86
NKX3-1Q99801 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC3.43□□□□□ -1.86
NKX3-1Q99801 RPL23AP33-201ENST00000442301 452 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 MTND2P19-201ENST00000449129 1012 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.43□□□□□ -1.86
NKX3-1Q99801 AC009963.2-201ENST00000453431 138 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 USP9YP34-201ENST00000453983 808 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 MTCO3P16-201ENST00000454456 754 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.43□□□□□ -1.86
NKX3-1Q99801 RN7SL271P-201ENST00000487601 295 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 AC091167.1-201ENST00000492017 396 ntBASIC3.43□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 121 ms