Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RPL23AP74-201ENST00000437246 471 ntBASIC3.18□□□□□ -1.9
CCDC88AQ3V6T2 RN7SL283P-201ENST00000489055 303 ntBASIC3.18□□□□□ -1.9
CCDC88AQ3V6T2 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC3.18□□□□□ -1.9
CCDC88AQ3V6T2 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC88AQ3V6T2 HPRT1P3-201ENST00000539521 576 ntBASIC3.18□□□□□ -1.9
CCDC88AQ3V6T2 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC3.18□□□□□ -1.9
CCDC88AQ3V6T2 AP006437.1-201ENST00000641440 3685 ntBASIC3.17□□□□□ -1.9
CCDC88AQ3V6T2 MTND5P27-201ENST00000428871 1720 ntBASIC3.17□□□□□ -1.9
CCDC88AQ3V6T2 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC88AQ3V6T2 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC88AQ3V6T2 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
CCDC88AQ3V6T2 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC88AQ3V6T2 MIR181B1-201ENST00000385240 110 ntBASIC3.17□□□□□ -1.9
CCDC88AQ3V6T2 RNU4-53P-201ENST00000410828 140 ntBASIC3.17□□□□□ -1.9
CCDC88AQ3V6T2 AC007064.1-201ENST00000412238 351 ntBASIC3.17□□□□□ -1.9
CCDC88AQ3V6T2 AL451074.5-201ENST00000415894 435 ntBASIC3.17□□□□□ -1.9
CCDC88AQ3V6T2 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC3.17□□□□□ -1.9
CCDC88AQ3V6T2 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC88AQ3V6T2 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC88AQ3V6T2 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
CCDC88AQ3V6T2 AP000926.1-201ENST00000479573 241 ntBASIC3.17□□□□□ -1.9
CCDC88AQ3V6T2 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC88AQ3V6T2 SEC11B-201ENST00000518383 499 ntBASIC3.17□□□□□ -1.9
CCDC88AQ3V6T2 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC88AQ3V6T2 AC100870.1-201ENST00000522035 505 ntBASIC3.17□□□□□ -1.9
CCDC88AQ3V6T2 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC88AQ3V6T2 NTAN1P1-201ENST00000603150 646 ntBASIC3.17□□□□□ -1.9
CCDC88AQ3V6T2 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.17□□□□□ -1.9
CCDC88AQ3V6T2 AC110994.2-201ENST00000635481 492 ntBASIC3.17□□□□□ -1.9
CCDC88AQ3V6T2 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC88AQ3V6T2 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
CCDC88AQ3V6T2 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
CCDC88AQ3V6T2 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC88AQ3V6T2 ANKRD18EP-201ENST00000405487 2632 ntBASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 AC108860.1-201ENST00000484521 383 ntBASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 AC034244.2-201ENST00000514668 858 ntBASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 HIGD1AP10-201ENST00000527837 282 ntBASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 AC010680.4-201ENST00000605334 543 ntBASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 AP000526.1-201ENST00000603308 1388 ntBASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 MTCO1P9-201ENST00000505577 1534 ntBASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 RNU6-253P-201ENST00000384730 105 ntBASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 RNA5SP105-201ENST00000391123 113 ntBASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 NDUFB4P5-201ENST00000415445 361 ntBASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 GAPDHP27-201ENST00000447427 1020 ntBASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 HSPE1P22-201ENST00000456856 327 ntBASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 OR8L1P-201ENST00000534005 955 ntBASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 CASC16-202ENST00000563844 610 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC88AQ3V6T2 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
CCDC88AQ3V6T2 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
CCDC88AQ3V6T2 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
CCDC88AQ3V6T2 SEPT7P6-201ENST00000469999 1143 ntBASIC3.15□□□□□ -1.91
CCDC88AQ3V6T2 AC068587.2-201ENST00000478386 781 ntBASIC3.15□□□□□ -1.91
CCDC88AQ3V6T2 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC88AQ3V6T2 AC234775.3-201ENST00000564612 656 ntBASIC3.15□□□□□ -1.91
CCDC88AQ3V6T2 MIR3605-201ENST00000583214 100 ntBASIC3.15□□□□□ -1.91
CCDC88AQ3V6T2 AC010338.1-201ENST00000621823 717 ntBASIC3.15□□□□□ -1.91
CCDC88AQ3V6T2 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.15□□□□□ -1.91
CCDC88AQ3V6T2 ZNF72P-201ENST00000425869 1908 ntBASIC3.15□□□□□ -1.91
CCDC88AQ3V6T2 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.15□□□□□ -1.91
CCDC88AQ3V6T2 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
CCDC88AQ3V6T2 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC3.15□□□□□ -1.91
CCDC88AQ3V6T2 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC88AQ3V6T2 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC88AQ3V6T2 MTND4LP13-201ENST00000425022 298 ntBASIC3.14□□□□□ -1.91
CCDC88AQ3V6T2 ST13P20-201ENST00000447996 1065 ntBASIC3.14□□□□□ -1.91
CCDC88AQ3V6T2 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC88AQ3V6T2 AC004241.3-201ENST00000611728 517 ntBASIC3.14□□□□□ -1.91
CCDC88AQ3V6T2 AC004696.1-201ENST00000614345 607 ntBASIC3.14□□□□□ -1.91
CCDC88AQ3V6T2 AC092184.1-201ENST00000625042 715 ntBASIC3.14□□□□□ -1.91
CCDC88AQ3V6T2 AC026634.1-201ENST00000634369 198 ntBASIC3.14□□□□□ -1.91
CCDC88AQ3V6T2 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC88AQ3V6T2 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC88AQ3V6T2 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
CCDC88AQ3V6T2 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 93.9 ms