Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC2.53□□□□□ -2
FOXF1Q12946 LINC00216-201ENST00000623548 1126 ntBASIC2.53□□□□□ -2
FOXF1Q12946 AC006386.2-201ENST00000624491 75 ntBASIC2.53□□□□□ -2
FOXF1Q12946 AC012005.1-201ENST00000624575 75 ntBASIC2.53□□□□□ -2
FOXF1Q12946 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
FOXF1Q12946 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC2.52□□□□□ -2.01
FOXF1Q12946 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
FOXF1Q12946 Z86062.1-201ENST00000406773 777 ntBASIC2.52□□□□□ -2.01
FOXF1Q12946 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC2.52□□□□□ -2.01
FOXF1Q12946 AC087499.2-201ENST00000432861 149 ntBASIC2.52□□□□□ -2.01
FOXF1Q12946 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.52□□□□□ -2.01
FOXF1Q12946 RPS29P6-201ENST00000438196 145 ntBASIC2.52□□□□□ -2.01
FOXF1Q12946 RPL21P2-201ENST00000440049 481 ntBASIC2.52□□□□□ -2.01
FOXF1Q12946 RPS24P13-201ENST00000442520 397 ntBASIC2.52□□□□□ -2.01
FOXF1Q12946 AC025750.2-201ENST00000442609 450 ntBASIC2.52□□□□□ -2.01
FOXF1Q12946 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.52□□□□□ -2.01
FOXF1Q12946 HMGN2P21-201ENST00000447764 270 ntBASIC2.52□□□□□ -2.01
FOXF1Q12946 GSTA11P-201ENST00000452866 669 ntBASIC2.52□□□□□ -2.01
FOXF1Q12946 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
FOXF1Q12946 RNU6-775P-201ENST00000459318 96 ntBASIC2.52□□□□□ -2.01
FOXF1Q12946 AC092754.2-201ENST00000463506 460 ntBASIC2.52□□□□□ -2.01
FOXF1Q12946 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC2.52□□□□□ -2.01
FOXF1Q12946 RPS26P21-201ENST00000475397 348 ntBASIC2.52□□□□□ -2.01
FOXF1Q12946 AC126121.1-201ENST00000482313 553 ntBASIC2.52□□□□□ -2.01
FOXF1Q12946 AC025459.1-201ENST00000504072 156 ntBASIC2.52□□□□□ -2.01
FOXF1Q12946 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC2.52□□□□□ -2.01
FOXF1Q12946 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.52□□□□□ -2.01
FOXF1Q12946 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC2.52□□□□□ -2.01
FOXF1Q12946 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC2.52□□□□□ -2.01
FOXF1Q12946 CD69-203ENST00000536709 1020 ntTSL 2 BASIC2.52□□□□□ -2.01
FOXF1Q12946 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC2.52□□□□□ -2.01
FOXF1Q12946 ARL1-211ENST00000551828 776 ntTSL 5 BASIC2.52□□□□□ -2.01
FOXF1Q12946 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC2.52□□□□□ -2.01
FOXF1Q12946 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC2.52□□□□□ -2.01
FOXF1Q12946 AC069304.3-201ENST00000603938 1084 ntBASIC2.52□□□□□ -2.01
FOXF1Q12946 AL451074.6-201ENST00000608512 729 ntBASIC2.52□□□□□ -2.01
FOXF1Q12946 AC004832.5-201ENST00000608677 401 ntBASIC2.52□□□□□ -2.01
FOXF1Q12946 MIR6864-201ENST00000617935 70 ntBASIC2.52□□□□□ -2.01
FOXF1Q12946 AC092184.1-201ENST00000625042 715 ntBASIC2.52□□□□□ -2.01
FOXF1Q12946 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.52□□□□□ -2.01
FOXF1Q12946 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
FOXF1Q12946 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC2.51□□□□□ -2.01
FOXF1Q12946 AL353746.1-201ENST00000566293 6881 ntBASIC2.51□□□□□ -2.01
FOXF1Q12946 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.51□□□□□ -2.01
FOXF1Q12946 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.51□□□□□ -2.01
FOXF1Q12946 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
FOXF1Q12946 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
FOXF1Q12946 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.51□□□□□ -2.01
FOXF1Q12946 MIR26A1-201ENST00000362205 77 ntBASIC2.51□□□□□ -2.01
FOXF1Q12946 SNORA27.3-201ENST00000364937 134 ntBASIC2.51□□□□□ -2.01
FOXF1Q12946 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC2.51□□□□□ -2.01
FOXF1Q12946 HMGB1P10-201ENST00000395823 563 ntBASIC2.51□□□□□ -2.01
FOXF1Q12946 AL590004.2-201ENST00000404787 371 ntBASIC2.51□□□□□ -2.01
FOXF1Q12946 AL589655.1-201ENST00000405398 482 ntBASIC2.51□□□□□ -2.01
FOXF1Q12946 AC234782.4-201ENST00000417646 1048 ntBASIC2.51□□□□□ -2.01
FOXF1Q12946 B3GALNT1P1-201ENST00000420569 975 ntBASIC2.51□□□□□ -2.01
FOXF1Q12946 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC2.51□□□□□ -2.01
FOXF1Q12946 SAR1AP4-201ENST00000429225 591 ntBASIC2.51□□□□□ -2.01
FOXF1Q12946 VDAC1P3-201ENST00000434069 851 ntBASIC2.51□□□□□ -2.01
FOXF1Q12946 HMGN2P20-201ENST00000437531 273 ntBASIC2.51□□□□□ -2.01
FOXF1Q12946 AL662791.1-201ENST00000441992 928 ntBASIC2.51□□□□□ -2.01
FOXF1Q12946 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC2.51□□□□□ -2.01
FOXF1Q12946 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC2.51□□□□□ -2.01
FOXF1Q12946 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC2.51□□□□□ -2.01
FOXF1Q12946 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.51□□□□□ -2.01
FOXF1Q12946 AC096992.1-201ENST00000459808 709 ntBASIC2.51□□□□□ -2.01
FOXF1Q12946 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC2.51□□□□□ -2.01
FOXF1Q12946 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC2.51□□□□□ -2.01
FOXF1Q12946 AC090543.1-201ENST00000492168 485 ntBASIC2.51□□□□□ -2.01
FOXF1Q12946 AC117522.3-201ENST00000507974 584 ntBASIC2.51□□□□□ -2.01
FOXF1Q12946 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC2.51□□□□□ -2.01
FOXF1Q12946 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
FOXF1Q12946 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC2.51□□□□□ -2.01
FOXF1Q12946 AC079600.2-201ENST00000550076 130 ntBASIC2.51□□□□□ -2.01
FOXF1Q12946 AC010198.2-201ENST00000550612 259 ntBASIC2.51□□□□□ -2.01
FOXF1Q12946 AC074029.1-201ENST00000552531 1044 ntBASIC2.51□□□□□ -2.01
FOXF1Q12946 EIF4BP1-201ENST00000554881 351 ntBASIC2.51□□□□□ -2.01
FOXF1Q12946 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC2.51□□□□□ -2.01
FOXF1Q12946 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC2.51□□□□□ -2.01
FOXF1Q12946 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.51□□□□□ -2.01
FOXF1Q12946 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC2.51□□□□□ -2.01
FOXF1Q12946 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC2.51□□□□□ -2.01
FOXF1Q12946 AC011468.4-201ENST00000603942 409 ntBASIC2.51□□□□□ -2.01
FOXF1Q12946 AC091488.1-201ENST00000604239 660 ntBASIC2.51□□□□□ -2.01
FOXF1Q12946 U6.48-201ENST00000618523 106 ntBASIC2.51□□□□□ -2.01
FOXF1Q12946 AC024023.1-201ENST00000624530 922 ntBASIC2.51□□□□□ -2.01
FOXF1Q12946 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC2.51□□□□□ -2.01
FOXF1Q12946 MTND5P3-201ENST00000438536 1800 ntBASIC2.51□□□□□ -2.01
FOXF1Q12946 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
FOXF1Q12946 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC2.51□□□□□ -2.01
FOXF1Q12946 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
FOXF1Q12946 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
FOXF1Q12946 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
FOXF1Q12946 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.5□□□□□ -2.01
FOXF1Q12946 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
FOXF1Q12946 EFTUD1P2-201ENST00000514817 1603 ntBASIC2.5□□□□□ -2.01
FOXF1Q12946 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC2.5□□□□□ -2.01
FOXF1Q12946 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC2.5□□□□□ -2.01
FOXF1Q12946 AC083799.1-201ENST00000366451 910 ntBASIC2.5□□□□□ -2.01
FOXF1Q12946 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC2.5□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms