Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RNU6-1314P-201ENST00000517139 104 ntBASIC5.53□□□□□ -1.52
LIG3P49916 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC5.53□□□□□ -1.52
LIG3P49916 MGST1-215ENST00000540056 546 ntTSL 3 BASIC5.53□□□□□ -1.52
LIG3P49916 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.53□□□□□ -1.52
LIG3P49916 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC5.53□□□□□ -1.52
LIG3P49916 CLMN-206ENST00000556441 452 ntTSL 5 BASIC5.53□□□□□ -1.52
LIG3P49916 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC5.53□□□□□ -1.52
LIG3P49916 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC5.53□□□□□ -1.52
LIG3P49916 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC5.53□□□□□ -1.52
LIG3P49916 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC5.53□□□□□ -1.52
LIG3P49916 AC011477.5-201ENST00000586571 259 ntBASIC5.53□□□□□ -1.52
LIG3P49916 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC5.53□□□□□ -1.52
LIG3P49916 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
LIG3P49916 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC5.53□□□□□ -1.52
LIG3P49916 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
LIG3P49916 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
LIG3P49916 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
LIG3P49916 MTND4P35-201ENST00000604257 1375 ntBASIC5.53□□□□□ -1.52
LIG3P49916 AL138713.1-201ENST00000624026 2130 ntBASIC5.53□□□□□ -1.52
LIG3P49916 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
LIG3P49916 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
LIG3P49916 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
LIG3P49916 ASNSP3-201ENST00000451989 1306 ntBASIC5.52□□□□□ -1.53
LIG3P49916 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
LIG3P49916 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
LIG3P49916 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
LIG3P49916 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
LIG3P49916 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.52□□□□□ -1.53
LIG3P49916 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
LIG3P49916 Y_RNA.22-201ENST00000362492 102 ntBASIC5.52□□□□□ -1.53
LIG3P49916 Y_RNA.67-201ENST00000362870 100 ntBASIC5.52□□□□□ -1.53
LIG3P49916 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
LIG3P49916 MIR558-201ENST00000384920 94 ntBASIC5.52□□□□□ -1.53
LIG3P49916 MIR454-201ENST00000390180 115 ntBASIC5.52□□□□□ -1.53
LIG3P49916 AC009804.1-201ENST00000400949 179 ntBASIC5.52□□□□□ -1.53
LIG3P49916 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC5.52□□□□□ -1.53
LIG3P49916 DUTP6-201ENST00000425573 462 ntBASIC5.52□□□□□ -1.53
LIG3P49916 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC5.52□□□□□ -1.53
LIG3P49916 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC5.52□□□□□ -1.53
LIG3P49916 MED13P1-201ENST00000428342 171 ntBASIC5.52□□□□□ -1.53
LIG3P49916 HMGB3P9-201ENST00000441799 583 ntBASIC5.52□□□□□ -1.53
LIG3P49916 Z95327.1-201ENST00000446082 482 ntBASIC5.52□□□□□ -1.53
LIG3P49916 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC5.52□□□□□ -1.53
LIG3P49916 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC5.52□□□□□ -1.53
LIG3P49916 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC5.52□□□□□ -1.53
LIG3P49916 RNU4ATAC8P-201ENST00000516196 109 ntBASIC5.52□□□□□ -1.53
LIG3P49916 RNU6-277P-201ENST00000516272 106 ntBASIC5.52□□□□□ -1.53
LIG3P49916 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5.52□□□□□ -1.53
LIG3P49916 AC090022.1-201ENST00000546569 311 ntBASIC5.52□□□□□ -1.53
LIG3P49916 AC006349.1-201ENST00000555526 235 ntBASIC5.52□□□□□ -1.53
LIG3P49916 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC5.52□□□□□ -1.53
LIG3P49916 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC5.52□□□□□ -1.53
LIG3P49916 FKBP1AP1-201ENST00000594588 318 ntBASIC5.52□□□□□ -1.53
LIG3P49916 AC087763.1-201ENST00000603391 286 ntBASIC5.52□□□□□ -1.53
LIG3P49916 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC5.52□□□□□ -1.53
LIG3P49916 Y_RNA.812-201ENST00000610788 101 ntBASIC5.52□□□□□ -1.53
LIG3P49916 Y_RNA.784-201ENST00000613803 101 ntBASIC5.52□□□□□ -1.53
LIG3P49916 Y_RNA.787-201ENST00000616522 101 ntBASIC5.52□□□□□ -1.53
LIG3P49916 Y_RNA.780-201ENST00000617336 101 ntBASIC5.52□□□□□ -1.53
LIG3P49916 Y_RNA.801-201ENST00000619005 101 ntBASIC5.52□□□□□ -1.53
LIG3P49916 USP12-203ENST00000620323 349 ntTSL 3 BASIC5.52□□□□□ -1.53
LIG3P49916 AC099494.2-201ENST00000623371 978 ntBASIC5.52□□□□□ -1.53
LIG3P49916 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
LIG3P49916 AL645937.1-201ENST00000641739 1652 ntBASIC5.52□□□□□ -1.53
LIG3P49916 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC5.52□□□□□ -1.53
LIG3P49916 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.52□□□□□ -1.53
LIG3P49916 LINC01355-201ENST00000566551 5444 ntBASIC5.52□□□□□ -1.53
LIG3P49916 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
LIG3P49916 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC5.52□□□□□ -1.53
LIG3P49916 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
LIG3P49916 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
LIG3P49916 AC008758.3-201ENST00000507003 1829 ntBASIC5.51□□□□□ -1.53
LIG3P49916 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.51□□□□□ -1.53
LIG3P49916 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
LIG3P49916 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
LIG3P49916 HSPE1P11-201ENST00000339579 310 ntBASIC5.51□□□□□ -1.53
LIG3P49916 Y_RNA.231-201ENST00000364358 102 ntBASIC5.51□□□□□ -1.53
LIG3P49916 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
LIG3P49916 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
LIG3P49916 PPIAP9-201ENST00000403866 498 ntBASIC5.51□□□□□ -1.53
LIG3P49916 RNU6-193P-201ENST00000410977 107 ntBASIC5.51□□□□□ -1.53
LIG3P49916 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC5.51□□□□□ -1.53
LIG3P49916 TRAPPC2P10-201ENST00000415662 323 ntBASIC5.51□□□□□ -1.53
LIG3P49916 BTF3L4P3-201ENST00000418879 476 ntBASIC5.51□□□□□ -1.53
LIG3P49916 CHIAP3-201ENST00000423668 1133 ntBASIC5.51□□□□□ -1.53
LIG3P49916 BRWD1P3-201ENST00000428816 390 ntBASIC5.51□□□□□ -1.53
LIG3P49916 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC5.51□□□□□ -1.53
LIG3P49916 AC007547.1-201ENST00000462177 490 ntBASIC5.51□□□□□ -1.53
LIG3P49916 IGBP1P4-201ENST00000503202 879 ntBASIC5.51□□□□□ -1.53
LIG3P49916 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC5.51□□□□□ -1.53
LIG3P49916 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC5.51□□□□□ -1.53
LIG3P49916 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC5.51□□□□□ -1.53
LIG3P49916 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.51□□□□□ -1.53
LIG3P49916 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
LIG3P49916 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC5.51□□□□□ -1.53
LIG3P49916 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC5.51□□□□□ -1.53
LIG3P49916 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC5.51□□□□□ -1.53
LIG3P49916 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC5.51□□□□□ -1.53
LIG3P49916 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC5.51□□□□□ -1.53
LIG3P49916 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms