Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC3.71□□□□□ -1.82
HOXD3P31249 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
HOXD3P31249 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
HOXD3P31249 CR848007.1-201ENST00000442354 1699 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 API5-210ENST00000534600 1760 ntTSL 5 BASIC3.71□□□□□ -1.82
HOXD3P31249 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC3.71□□□□□ -1.82
HOXD3P31249 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
HOXD3P31249 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
HOXD3P31249 AC092125.1-201ENST00000562568 1995 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC3.71□□□□□ -1.82
HOXD3P31249 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXD3P31249 AC007529.1-201ENST00000418574 2178 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXD3P31249 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXD3P31249 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXD3P31249 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
HOXD3P31249 SAGE2P-201ENST00000420011 2126 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXD3P31249 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXD3P31249 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
HOXD3P31249 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC3.7□□□□□ -1.82
HOXD3P31249 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HOXD3P31249 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXD3P31249 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
HOXD3P31249 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXD3P31249 Y_RNA.548-201ENST00000384656 105 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 U3.30-201ENST00000391308 210 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
HOXD3P31249 MTCO3P40-201ENST00000392516 676 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 BTBD10P2-201ENST00000404779 676 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXD3P31249 AC127526.1-201ENST00000417526 366 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 RPS15AP40-201ENST00000419621 391 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 DPPA2P1-201ENST00000428060 556 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 RPL31P35-201ENST00000431058 377 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 AL451139.1-201ENST00000434718 346 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 AL356276.2-201ENST00000435919 558 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 AC005154.2-201ENST00000438110 379 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 AC127537.2-201ENST00000439258 465 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXD3P31249 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HOXD3P31249 NFU1P2-201ENST00000448700 469 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 CEACAMP6-201ENST00000452007 574 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC3.7□□□□□ -1.82
HOXD3P31249 RPS5P7-201ENST00000456664 608 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC3.7□□□□□ -1.82
HOXD3P31249 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXD3P31249 AP001992.1-205ENST00000462248 379 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 AC087385.1-201ENST00000475062 312 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 RBM43P1-201ENST00000476891 1081 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC3.7□□□□□ -1.82
HOXD3P31249 AC009646.1-201ENST00000510455 318 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 RNU6-709P-201ENST00000517257 104 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 IGKV1-32-201ENST00000519290 311 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXD3P31249 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXD3P31249 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXD3P31249 DEFB109D-201ENST00000529497 240 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
HOXD3P31249 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXD3P31249 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXD3P31249 AC068135.2-201ENST00000569293 1028 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 MIR4458-201ENST00000578872 75 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 MIR548S-201ENST00000581352 82 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 MIR4472-2-201ENST00000582069 67 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 AC022726.1-201ENST00000587475 207 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXD3P31249 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HOXD3P31249 AC008782.1-201ENST00000603386 430 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 RNU6-87P-201ENST00000607561 108 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 AP001596.2-201ENST00000608410 312 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 AL592295.2-201ENST00000612578 206 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 AP000843.1-201ENST00000624880 701 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXD3P31249 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXD3P31249 MIR3688-2-201ENST00000636963 87 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 MIR6715B-201ENST00000637172 77 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXD3P31249 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HOXD3P31249 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXD3P31249 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXD3P31249 AL592182.3-201ENST00000642132 3304 ntBASIC3.7□□□□□ -1.82
HOXD3P31249 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC3.7□□□□□ -1.82
HOXD3P31249 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC3.7□□□□□ -1.82
HOXD3P31249 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
HOXD3P31249 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
HOXD3P31249 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
HOXD3P31249 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
HOXD3P31249 SCN1A-220ENST00000641603 12506 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 TLK1P1-201ENST00000456760 2440 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC3.69□□□□□ -1.82
HOXD3P31249 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
HOXD3P31249 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
HOXD3P31249 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
HOXD3P31249 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
HOXD3P31249 RNA5-8SP7-201ENST00000363443 155 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 RNU6-1090P-201ENST00000364065 94 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 SNORA70.2-201ENST00000364506 135 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 RNU5E-4P-201ENST00000364931 120 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms