Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
HLA-DMBP28068 RPL23AP57-201ENST00000332361 466 ntBASIC2.34□□□□□ -2.03
HLA-DMBP28068 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC2.34□□□□□ -2.03
HLA-DMBP28068 RPL17P50-201ENST00000396131 546 ntBASIC2.34□□□□□ -2.03
HLA-DMBP28068 MIR1250-201ENST00000408098 113 ntBASIC2.34□□□□□ -2.03
HLA-DMBP28068 Z92545.1-201ENST00000411782 234 ntBASIC2.34□□□□□ -2.03
HLA-DMBP28068 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC2.34□□□□□ -2.03
HLA-DMBP28068 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC2.34□□□□□ -2.03
HLA-DMBP28068 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC2.34□□□□□ -2.03
HLA-DMBP28068 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC2.34□□□□□ -2.03
HLA-DMBP28068 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC2.34□□□□□ -2.03
HLA-DMBP28068 Z75741.1-201ENST00000446793 314 ntBASIC2.34□□□□□ -2.03
HLA-DMBP28068 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC2.34□□□□□ -2.03
HLA-DMBP28068 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC2.34□□□□□ -2.03
HLA-DMBP28068 SETP6-201ENST00000479329 568 ntBASIC2.34□□□□□ -2.03
HLA-DMBP28068 AC118282.1-201ENST00000506408 765 ntBASIC2.34□□□□□ -2.03
HLA-DMBP28068 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC2.34□□□□□ -2.03
HLA-DMBP28068 AC119751.1-201ENST00000513357 765 ntBASIC2.34□□□□□ -2.03
HLA-DMBP28068 MTCO2P32-201ENST00000514865 403 ntBASIC2.34□□□□□ -2.03
HLA-DMBP28068 SNORA31.13-201ENST00000516624 135 ntBASIC2.34□□□□□ -2.03
HLA-DMBP28068 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC2.34□□□□□ -2.03
HLA-DMBP28068 AC104986.1-201ENST00000517978 436 ntBASIC2.34□□□□□ -2.03
HLA-DMBP28068 AF279873.1-201ENST00000523393 313 ntBASIC2.34□□□□□ -2.03
HLA-DMBP28068 AC139103.1-201ENST00000534696 1030 ntBASIC2.34□□□□□ -2.03
HLA-DMBP28068 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC2.34□□□□□ -2.03
HLA-DMBP28068 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC2.34□□□□□ -2.03
HLA-DMBP28068 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC2.34□□□□□ -2.03
HLA-DMBP28068 AC012493.2-201ENST00000595083 291 ntBASIC2.34□□□□□ -2.03
HLA-DMBP28068 AC007566.2-201ENST00000603642 413 ntBASIC2.34□□□□□ -2.03
HLA-DMBP28068 AC022387.2-201ENST00000604050 448 ntBASIC2.34□□□□□ -2.03
HLA-DMBP28068 YPEL5P2-201ENST00000605553 359 ntBASIC2.34□□□□□ -2.03
HLA-DMBP28068 AC231759.1-201ENST00000616455 597 ntBASIC2.34□□□□□ -2.03
HLA-DMBP28068 MIR8057-201ENST00000620957 69 ntBASIC2.34□□□□□ -2.03
HLA-DMBP28068 AL356490.1-201ENST00000623079 479 ntBASIC2.34□□□□□ -2.03
HLA-DMBP28068 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC2.34□□□□□ -2.03
HLA-DMBP28068 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC2.34□□□□□ -2.04
HLA-DMBP28068 AC092447.7-201ENST00000422212 1621 ntBASIC2.34□□□□□ -2.04
HLA-DMBP28068 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.34□□□□□ -2.04
HLA-DMBP28068 AL365361.1-201ENST00000566942 3481 ntBASIC2.34□□□□□ -2.04
HLA-DMBP28068 AC009487.2-201ENST00000420969 6821 ntBASIC2.34□□□□□ -2.04
HLA-DMBP28068 MTND4P8-201ENST00000514997 1362 ntBASIC2.34□□□□□ -2.04
HLA-DMBP28068 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC2.34□□□□□ -2.04
HLA-DMBP28068 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.04
HLA-DMBP28068 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC2.34□□□□□ -2.04
HLA-DMBP28068 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
HLA-DMBP28068 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.33□□□□□ -2.04
HLA-DMBP28068 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC2.33□□□□□ -2.04
HLA-DMBP28068 OFD1P1Y-201ENST00000411756 1225 ntBASIC2.33□□□□□ -2.04
HLA-DMBP28068 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC2.33□□□□□ -2.04
HLA-DMBP28068 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
HLA-DMBP28068 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC2.33□□□□□ -2.04
HLA-DMBP28068 RPL7P10-201ENST00000417407 739 ntBASIC2.33□□□□□ -2.04
HLA-DMBP28068 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC2.33□□□□□ -2.04
HLA-DMBP28068 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC2.33□□□□□ -2.04
HLA-DMBP28068 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC2.33□□□□□ -2.04
HLA-DMBP28068 RPL21P41-201ENST00000459863 264 ntBASIC2.33□□□□□ -2.04
HLA-DMBP28068 RN7SL499P-201ENST00000481141 276 ntBASIC2.33□□□□□ -2.04
HLA-DMBP28068 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC2.33□□□□□ -2.04
HLA-DMBP28068 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC2.33□□□□□ -2.04
HLA-DMBP28068 DSTNP2-201ENST00000504533 515 ntBASIC2.33□□□□□ -2.04
HLA-DMBP28068 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC2.33□□□□□ -2.04
HLA-DMBP28068 RPL7L1P13-201ENST00000511702 739 ntBASIC2.33□□□□□ -2.04
HLA-DMBP28068 RNU6-889P-201ENST00000517189 103 ntBASIC2.33□□□□□ -2.04
HLA-DMBP28068 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC2.33□□□□□ -2.04
HLA-DMBP28068 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC2.33□□□□□ -2.04
HLA-DMBP28068 AC093014.1-201ENST00000548926 724 ntBASIC2.33□□□□□ -2.04
HLA-DMBP28068 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC2.33□□□□□ -2.04
HLA-DMBP28068 UBL5P2-201ENST00000583788 219 ntBASIC2.33□□□□□ -2.04
HLA-DMBP28068 AC005000.2-201ENST00000605468 310 ntBASIC2.33□□□□□ -2.04
HLA-DMBP28068 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC2.33□□□□□ -2.04
HLA-DMBP28068 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC2.33□□□□□ -2.04
HLA-DMBP28068 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
HLA-DMBP28068 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC2.33□□□□□ -2.04
HLA-DMBP28068 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC2.33□□□□□ -2.04
HLA-DMBP28068 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC2.33□□□□□ -2.04
HLA-DMBP28068 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC2.33□□□□□ -2.04
HLA-DMBP28068 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
HLA-DMBP28068 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
HLA-DMBP28068 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC2.33□□□□□ -2.04
HLA-DMBP28068 AC103988.1-201ENST00000566382 2177 ntBASIC2.33□□□□□ -2.04
HLA-DMBP28068 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
HLA-DMBP28068 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC2.33□□□□□ -2.04
HLA-DMBP28068 CPD-202ENST00000543464 4007 ntTSL 2 BASIC2.33□□□□□ -2.04
HLA-DMBP28068 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
HLA-DMBP28068 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
HLA-DMBP28068 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
HLA-DMBP28068 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
HLA-DMBP28068 GNG5P1-201ENST00000255500 204 ntBASIC2.32□□□□□ -2.04
HLA-DMBP28068 RNA5-8SP4-201ENST00000365096 150 ntBASIC2.32□□□□□ -2.04
HLA-DMBP28068 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
HLA-DMBP28068 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
HLA-DMBP28068 RNU4-47P-201ENST00000410876 114 ntBASIC2.32□□□□□ -2.04
HLA-DMBP28068 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC2.32□□□□□ -2.04
HLA-DMBP28068 AL513175.1-201ENST00000431492 780 ntBASIC2.32□□□□□ -2.04
HLA-DMBP28068 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC2.32□□□□□ -2.04
HLA-DMBP28068 RPS7P2-201ENST00000435134 607 ntBASIC2.32□□□□□ -2.04
HLA-DMBP28068 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC2.32□□□□□ -2.04
HLA-DMBP28068 XKRYP6-201ENST00000440468 1116 ntBASIC2.32□□□□□ -2.04
HLA-DMBP28068 XKRYP3-201ENST00000442113 1116 ntBASIC2.32□□□□□ -2.04
HLA-DMBP28068 RN7SL863P-201ENST00000462370 296 ntBASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms