Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL8A1P27658 CYP3A5-201ENST00000222982 1720 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL8A1P27658 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL8A1P27658 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL8A1P27658 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC5.37□□□□□ -1.55
COL8A1P27658 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC5.36□□□□□ -1.55
COL8A1P27658 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL8A1P27658 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC5.36□□□□□ -1.55
COL8A1P27658 Y_RNA.48-201ENST00000362710 103 ntBASIC5.36□□□□□ -1.55
COL8A1P27658 RNU1-49P-201ENST00000363468 159 ntBASIC5.36□□□□□ -1.55
COL8A1P27658 Y_RNA.234-201ENST00000364409 97 ntBASIC5.36□□□□□ -1.55
COL8A1P27658 RNU6-153P-201ENST00000364422 104 ntBASIC5.36□□□□□ -1.55
COL8A1P27658 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
COL8A1P27658 Y_RNA.418-201ENST00000384029 102 ntBASIC5.36□□□□□ -1.55
COL8A1P27658 SNORA16.2-201ENST00000390991 127 ntBASIC5.36□□□□□ -1.55
COL8A1P27658 AL080315.1-201ENST00000406055 466 ntBASIC5.36□□□□□ -1.55
COL8A1P27658 EIF4EP2-201ENST00000422816 654 ntBASIC5.36□□□□□ -1.55
COL8A1P27658 BX276092.3-201ENST00000424182 230 ntBASIC5.36□□□□□ -1.55
COL8A1P27658 AL662874.1-201ENST00000426065 230 ntBASIC5.36□□□□□ -1.55
COL8A1P27658 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC5.36□□□□□ -1.55
COL8A1P27658 snoU13.8-201ENST00000458890 104 ntBASIC5.36□□□□□ -1.55
COL8A1P27658 RNU7-169P-201ENST00000459456 61 ntBASIC5.36□□□□□ -1.55
COL8A1P27658 OARD1-209ENST00000471367 401 ntTSL 2 BASIC5.36□□□□□ -1.55
COL8A1P27658 AL122020.1-201ENST00000472287 459 ntBASIC5.36□□□□□ -1.55
COL8A1P27658 RN7SL30P-201ENST00000488416 306 ntBASIC5.36□□□□□ -1.55
COL8A1P27658 AC069499.1-201ENST00000489433 509 ntBASIC5.36□□□□□ -1.55
COL8A1P27658 AC110792.1-201ENST00000491826 472 ntBASIC5.36□□□□□ -1.55
COL8A1P27658 RPL7P23-201ENST00000493874 747 ntBASIC5.36□□□□□ -1.55
COL8A1P27658 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC5.36□□□□□ -1.55
COL8A1P27658 RNU6-911P-201ENST00000516523 104 ntBASIC5.36□□□□□ -1.55
COL8A1P27658 Y_RNA.713-201ENST00000517013 96 ntBASIC5.36□□□□□ -1.55
COL8A1P27658 LDHC-203ENST00000535809 757 ntTSL 5 BASIC5.36□□□□□ -1.55
COL8A1P27658 LDHC-205ENST00000537486 583 ntTSL 5 BASIC5.36□□□□□ -1.55
COL8A1P27658 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC5.36□□□□□ -1.55
COL8A1P27658 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC5.36□□□□□ -1.55
COL8A1P27658 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC5.36□□□□□ -1.55
COL8A1P27658 MIR4643-201ENST00000577473 78 ntBASIC5.36□□□□□ -1.55
COL8A1P27658 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC5.36□□□□□ -1.55
COL8A1P27658 AC022884.3-201ENST00000579571 248 ntBASIC5.36□□□□□ -1.55
COL8A1P27658 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC5.36□□□□□ -1.55
COL8A1P27658 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC5.36□□□□□ -1.55
COL8A1P27658 NANOGP3-201ENST00000605855 286 ntBASIC5.36□□□□□ -1.55
COL8A1P27658 AC091768.1-201ENST00000609258 930 ntBASIC5.36□□□□□ -1.55
COL8A1P27658 MIR6820-201ENST00000611508 62 ntBASIC5.36□□□□□ -1.55
COL8A1P27658 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL8A1P27658 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC5.36□□□□□ -1.55
COL8A1P27658 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC5.36□□□□□ -1.55
COL8A1P27658 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC5.36□□□□□ -1.55
COL8A1P27658 FKBP5-202ENST00000536438 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL8A1P27658 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC5.36□□□□□ -1.55
COL8A1P27658 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL8A1P27658 VTCN1-207ENST00000539893 2719 ntTSL 2 BASIC5.36□□□□□ -1.55
COL8A1P27658 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC5.36□□□□□ -1.55
COL8A1P27658 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
COL8A1P27658 DNM1P47-203ENST00000571780 12667 ntBASIC5.35□□□□□ -1.55
COL8A1P27658 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL8A1P27658 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
COL8A1P27658 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
COL8A1P27658 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL8A1P27658 SLC26A7-202ENST00000309536 2656 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL8A1P27658 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL8A1P27658 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
COL8A1P27658 ZNF33CP-201ENST00000432492 2030 ntBASIC5.35□□□□□ -1.55
COL8A1P27658 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC5.35□□□□□ -1.55
COL8A1P27658 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC5.35□□□□□ -1.55
COL8A1P27658 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL8A1P27658 PRLR-216ENST00000542609 1764 ntTSL 5 BASIC5.35□□□□□ -1.55
COL8A1P27658 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL8A1P27658 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL8A1P27658 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
COL8A1P27658 RNA5SP46-201ENST00000362370 120 ntBASIC5.35□□□□□ -1.55
COL8A1P27658 RNA5SP333-201ENST00000363466 118 ntBASIC5.35□□□□□ -1.55
COL8A1P27658 RN7SKP124-201ENST00000364730 341 ntBASIC5.35□□□□□ -1.55
COL8A1P27658 RNA5SP334-201ENST00000364825 118 ntBASIC5.35□□□□□ -1.55
COL8A1P27658 RNU6-317P-201ENST00000384031 107 ntBASIC5.35□□□□□ -1.55
COL8A1P27658 RNU6-44P-201ENST00000384045 107 ntBASIC5.35□□□□□ -1.55
COL8A1P27658 RN7SKP125-201ENST00000410481 302 ntBASIC5.35□□□□□ -1.55
COL8A1P27658 RNU6-394P-201ENST00000410735 107 ntBASIC5.35□□□□□ -1.55
COL8A1P27658 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL8A1P27658 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC5.35□□□□□ -1.55
COL8A1P27658 AC140479.3-201ENST00000418944 1126 ntBASIC5.35□□□□□ -1.55
COL8A1P27658 PSMA2P3-201ENST00000429685 675 ntBASIC5.35□□□□□ -1.55
COL8A1P27658 AC087650.1-201ENST00000431445 468 ntBASIC5.35□□□□□ -1.55
COL8A1P27658 RPL37P1-201ENST00000432310 284 ntBASIC5.35□□□□□ -1.55
COL8A1P27658 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC5.35□□□□□ -1.55
COL8A1P27658 RPS26P40-201ENST00000435209 294 ntBASIC5.35□□□□□ -1.55
COL8A1P27658 CR769767.1-201ENST00000436337 346 ntBASIC5.35□□□□□ -1.55
COL8A1P27658 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC5.35□□□□□ -1.55
COL8A1P27658 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.35□□□□□ -1.55
COL8A1P27658 AL772161.1-201ENST00000439130 476 ntBASIC5.35□□□□□ -1.55
COL8A1P27658 MTND6P5-201ENST00000448266 512 ntBASIC5.35□□□□□ -1.55
COL8A1P27658 RPL23AP15-201ENST00000450202 459 ntBASIC5.35□□□□□ -1.55
COL8A1P27658 AC068522.1-201ENST00000482895 345 ntBASIC5.35□□□□□ -1.55
COL8A1P27658 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC5.35□□□□□ -1.55
COL8A1P27658 LEF1-218ENST00000512172 598 ntTSL 2 BASIC5.35□□□□□ -1.55
COL8A1P27658 AC100784.1-201ENST00000522790 310 ntBASIC5.35□□□□□ -1.55
COL8A1P27658 CYCSP27-201ENST00000527643 293 ntBASIC5.35□□□□□ -1.55
COL8A1P27658 SOX9-AS1-208ENST00000529667 340 ntTSL 3 BASIC5.35□□□□□ -1.55
COL8A1P27658 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC5.35□□□□□ -1.55
COL8A1P27658 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 110.3 ms