Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC011979.1-201ENST00000472300 483 ntBASIC4.22□□□□□ -1.73
BDNFP23560 HMGN2P13-201ENST00000476476 274 ntBASIC4.22□□□□□ -1.73
BDNFP23560 TMEM251P1-201ENST00000503717 318 ntBASIC4.22□□□□□ -1.73
BDNFP23560 AC017037.1-201ENST00000508460 471 ntBASIC4.22□□□□□ -1.73
BDNFP23560 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.22□□□□□ -1.73
BDNFP23560 NPM1P41-201ENST00000512920 831 ntBASIC4.22□□□□□ -1.73
BDNFP23560 RNA5SP154-201ENST00000516193 111 ntBASIC4.22□□□□□ -1.73
BDNFP23560 HSPE1P5-201ENST00000561489 272 ntBASIC4.22□□□□□ -1.73
BDNFP23560 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC4.22□□□□□ -1.73
BDNFP23560 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC4.22□□□□□ -1.73
BDNFP23560 AC093227.2-201ENST00000589357 285 ntBASIC4.22□□□□□ -1.73
BDNFP23560 AC013444.2-201ENST00000603317 787 ntBASIC4.22□□□□□ -1.73
BDNFP23560 AC104662.1-201ENST00000604448 511 ntBASIC4.22□□□□□ -1.73
BDNFP23560 AL121895.2-201ENST00000619558 447 ntBASIC4.22□□□□□ -1.73
BDNFP23560 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.22□□□□□ -1.73
BDNFP23560 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC4.22□□□□□ -1.73
BDNFP23560 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
BDNFP23560 AL353746.1-201ENST00000566293 6881 ntBASIC4.22□□□□□ -1.73
BDNFP23560 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.22□□□□□ -1.73
BDNFP23560 AC110774.1-201ENST00000623567 2018 ntBASIC4.22□□□□□ -1.73
BDNFP23560 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
BDNFP23560 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.22□□□□□ -1.73
BDNFP23560 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
BDNFP23560 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
BDNFP23560 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
BDNFP23560 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
BDNFP23560 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.21□□□□□ -1.73
BDNFP23560 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
BDNFP23560 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
BDNFP23560 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
BDNFP23560 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
BDNFP23560 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
BDNFP23560 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
BDNFP23560 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
BDNFP23560 RNA5SP399-201ENST00000364003 117 ntBASIC4.21□□□□□ -1.74
BDNFP23560 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
BDNFP23560 SNORA1.3-201ENST00000384676 136 ntBASIC4.21□□□□□ -1.74
BDNFP23560 AL031679.1-201ENST00000400616 525 ntBASIC4.21□□□□□ -1.74
BDNFP23560 AL445189.1-201ENST00000405722 338 ntBASIC4.21□□□□□ -1.74
BDNFP23560 RNU2-43P-201ENST00000410306 190 ntBASIC4.21□□□□□ -1.74
BDNFP23560 RNU2-47P-201ENST00000410649 186 ntBASIC4.21□□□□□ -1.74
BDNFP23560 RNA5SP104-201ENST00000410989 118 ntBASIC4.21□□□□□ -1.74
BDNFP23560 AC009237.5-201ENST00000414271 501 ntBASIC4.21□□□□□ -1.74
BDNFP23560 RPL36AP36-201ENST00000418616 301 ntBASIC4.21□□□□□ -1.74
BDNFP23560 TEX41-203ENST00000420472 765 ntTSL 3 BASIC4.21□□□□□ -1.74
BDNFP23560 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC4.21□□□□□ -1.74
BDNFP23560 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4.21□□□□□ -1.74
BDNFP23560 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
BDNFP23560 OR6K5P-201ENST00000447050 945 ntBASIC4.21□□□□□ -1.74
BDNFP23560 AL031313.1-201ENST00000448435 256 ntBASIC4.21□□□□□ -1.74
BDNFP23560 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.21□□□□□ -1.74
BDNFP23560 MTATP6P14-201ENST00000455189 673 ntBASIC4.21□□□□□ -1.74
BDNFP23560 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC4.21□□□□□ -1.74
BDNFP23560 RNU6-711P-201ENST00000517255 106 ntBASIC4.21□□□□□ -1.74
BDNFP23560 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.21□□□□□ -1.74
BDNFP23560 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC4.21□□□□□ -1.74
BDNFP23560 AC069240.1-201ENST00000548774 375 ntBASIC4.21□□□□□ -1.74
BDNFP23560 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
BDNFP23560 AL596245.1-201ENST00000618994 362 ntBASIC4.21□□□□□ -1.74
BDNFP23560 AC109809.1-201ENST00000619665 545 ntBASIC4.21□□□□□ -1.74
BDNFP23560 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC4.21□□□□□ -1.74
BDNFP23560 AC099654.9-201ENST00000637055 678 ntBASIC4.21□□□□□ -1.74
BDNFP23560 AC099654.8-201ENST00000637757 681 ntBASIC4.21□□□□□ -1.74
BDNFP23560 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.21□□□□□ -1.74
BDNFP23560 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC4.21□□□□□ -1.74
BDNFP23560 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC4.21□□□□□ -1.74
BDNFP23560 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.74
BDNFP23560 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.2□□□□□ -1.74
BDNFP23560 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.2□□□□□ -1.74
BDNFP23560 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
BDNFP23560 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
BDNFP23560 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC4.2□□□□□ -1.74
BDNFP23560 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
BDNFP23560 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.2□□□□□ -1.74
BDNFP23560 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
BDNFP23560 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
BDNFP23560 RPL23AP57-201ENST00000332361 466 ntBASIC4.2□□□□□ -1.74
BDNFP23560 DEFB108F-201ENST00000344638 222 ntBASIC4.2□□□□□ -1.74
BDNFP23560 RNU6-28P-201ENST00000362378 107 ntBASIC4.2□□□□□ -1.74
BDNFP23560 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
BDNFP23560 RNU6-213P-201ENST00000384051 104 ntBASIC4.2□□□□□ -1.74
BDNFP23560 MIR93-201ENST00000385024 80 ntBASIC4.2□□□□□ -1.74
BDNFP23560 SNORA11-201ENST00000408789 128 ntBASIC4.2□□□□□ -1.74
BDNFP23560 RNU6-1077P-201ENST00000410506 102 ntBASIC4.2□□□□□ -1.74
BDNFP23560 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC4.2□□□□□ -1.74
BDNFP23560 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.2□□□□□ -1.74
BDNFP23560 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC4.2□□□□□ -1.74
BDNFP23560 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC4.2□□□□□ -1.74
BDNFP23560 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
BDNFP23560 AC007742.1-201ENST00000425789 329 ntBASIC4.2□□□□□ -1.74
BDNFP23560 ELOCP26-201ENST00000436067 329 ntBASIC4.2□□□□□ -1.74
BDNFP23560 RPL26P28-201ENST00000451325 435 ntBASIC4.2□□□□□ -1.74
BDNFP23560 AC234775.1-201ENST00000454247 670 ntBASIC4.2□□□□□ -1.74
BDNFP23560 ARPC3P2-201ENST00000457786 533 ntBASIC4.2□□□□□ -1.74
BDNFP23560 RN7SL132P-201ENST00000478131 296 ntBASIC4.2□□□□□ -1.74
BDNFP23560 AL139099.1-201ENST00000497398 403 ntBASIC4.2□□□□□ -1.74
BDNFP23560 PRELID3BP6-201ENST00000503839 571 ntBASIC4.2□□□□□ -1.74
BDNFP23560 AC006499.6-201ENST00000511169 607 ntBASIC4.2□□□□□ -1.74
BDNFP23560 SNORD59.2-201ENST00000516873 68 ntBASIC4.2□□□□□ -1.74
BDNFP23560 CA1-215ENST00000522389 551 ntTSL 3 BASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms