Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.81□□□□□ -1.8
MSH3P20585 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC3.81□□□□□ -1.8
MSH3P20585 AC110760.3-201ENST00000598794 467 ntBASIC3.81□□□□□ -1.8
MSH3P20585 AL020997.2-201ENST00000602607 184 ntBASIC3.81□□□□□ -1.8
MSH3P20585 AC115621.1-201ENST00000604653 858 ntBASIC3.81□□□□□ -1.8
MSH3P20585 AP003117.2-201ENST00000606010 545 ntBASIC3.81□□□□□ -1.8
MSH3P20585 PACRG-211ENST00000621363 360 ntTSL 5 BASIC3.81□□□□□ -1.8
MSH3P20585 AC120349.2-201ENST00000625002 298 ntBASIC3.81□□□□□ -1.8
MSH3P20585 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
MSH3P20585 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
MSH3P20585 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC3.81□□□□□ -1.8
MSH3P20585 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
MSH3P20585 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC3.81□□□□□ -1.8
MSH3P20585 OFD1P5Y-201ENST00000447585 2590 ntBASIC3.8□□□□□ -1.8
MSH3P20585 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.8□□□□□ -1.8
MSH3P20585 AL513185.3-201ENST00000433335 1300 ntBASIC3.8□□□□□ -1.8
MSH3P20585 MAPK10-372ENST00000641954 3413 ntBASIC3.8□□□□□ -1.8
MSH3P20585 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
MSH3P20585 USP44-208ENST00000552440 1818 ntTSL 5 BASIC3.8□□□□□ -1.8
MSH3P20585 U3.15-201ENST00000365398 212 ntBASIC3.8□□□□□ -1.8
MSH3P20585 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
MSH3P20585 SNORD116-1-201ENST00000384335 95 ntBASIC3.8□□□□□ -1.8
MSH3P20585 MIR30B-201ENST00000384850 88 ntBASIC3.8□□□□□ -1.8
MSH3P20585 DSTNP4-201ENST00000399472 474 ntBASIC3.8□□□□□ -1.8
MSH3P20585 RNU2-21P-201ENST00000410368 188 ntBASIC3.8□□□□□ -1.8
MSH3P20585 RPS12P23-201ENST00000419579 400 ntBASIC3.8□□□□□ -1.8
MSH3P20585 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC3.8□□□□□ -1.8
MSH3P20585 AL022400.1-201ENST00000423946 935 ntBASIC3.8□□□□□ -1.8
MSH3P20585 UBE2V1P1-201ENST00000430836 445 ntBASIC3.8□□□□□ -1.8
MSH3P20585 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC3.8□□□□□ -1.8
MSH3P20585 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
MSH3P20585 RPS25P9-201ENST00000435591 252 ntBASIC3.8□□□□□ -1.8
MSH3P20585 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC3.8□□□□□ -1.8
MSH3P20585 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC3.8□□□□□ -1.8
MSH3P20585 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC3.8□□□□□ -1.8
MSH3P20585 AC098824.1-201ENST00000453565 980 ntBASIC3.8□□□□□ -1.8
MSH3P20585 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC3.8□□□□□ -1.8
MSH3P20585 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.8□□□□□ -1.8
MSH3P20585 RPS20P21-201ENST00000466859 343 ntBASIC3.8□□□□□ -1.8
MSH3P20585 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
MSH3P20585 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
MSH3P20585 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC3.8□□□□□ -1.8
MSH3P20585 KLRA1P-201ENST00000503499 986 ntBASIC3.8□□□□□ -1.8
MSH3P20585 AC004069.2-201ENST00000505438 1114 ntBASIC3.8□□□□□ -1.8
MSH3P20585 AC111000.2-201ENST00000507775 550 ntBASIC3.8□□□□□ -1.8
MSH3P20585 HMGB1P28-201ENST00000507778 552 ntBASIC3.8□□□□□ -1.8
MSH3P20585 USP9YP5-201ENST00000511770 630 ntBASIC3.8□□□□□ -1.8
MSH3P20585 AC108043.1-201ENST00000512696 574 ntBASIC3.8□□□□□ -1.8
MSH3P20585 NPM1P41-201ENST00000512920 831 ntBASIC3.8□□□□□ -1.8
MSH3P20585 MTND4LP31-201ENST00000514859 294 ntBASIC3.8□□□□□ -1.8
MSH3P20585 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC3.8□□□□□ -1.8
MSH3P20585 OR5AK1P-201ENST00000524837 922 ntBASIC3.8□□□□□ -1.8
MSH3P20585 CASP1-212ENST00000531166 300 ntTSL 5 BASIC3.8□□□□□ -1.8
MSH3P20585 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.8□□□□□ -1.8
MSH3P20585 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.8□□□□□ -1.8
MSH3P20585 AC074051.3-201ENST00000570238 358 ntBASIC3.8□□□□□ -1.8
MSH3P20585 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC3.8□□□□□ -1.8
MSH3P20585 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC3.8□□□□□ -1.8
MSH3P20585 AC069304.2-201ENST00000605154 435 ntBASIC3.8□□□□□ -1.8
MSH3P20585 AC112220.3-201ENST00000605502 502 ntBASIC3.8□□□□□ -1.8
MSH3P20585 AC124312.4-201ENST00000605533 310 ntBASIC3.8□□□□□ -1.8
MSH3P20585 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.8□□□□□ -1.8
MSH3P20585 AC072039.2-201ENST00000608883 439 ntBASIC3.8□□□□□ -1.8
MSH3P20585 AL359535.1-201ENST00000612100 1087 ntBASIC3.8□□□□□ -1.8
MSH3P20585 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.8□□□□□ -1.8
MSH3P20585 AC005344.1-201ENST00000613391 459 ntBASIC3.8□□□□□ -1.8
MSH3P20585 AC099669.2-201ENST00000616549 437 ntBASIC3.8□□□□□ -1.8
MSH3P20585 AL607023.1-201ENST00000620045 248 ntBASIC3.8□□□□□ -1.8
MSH3P20585 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC3.8□□□□□ -1.8
MSH3P20585 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
MSH3P20585 FP236240.3-201ENST00000623061 327 ntBASIC3.8□□□□□ -1.8
MSH3P20585 AC098679.5-201ENST00000624394 571 ntBASIC3.8□□□□□ -1.8
MSH3P20585 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
MSH3P20585 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.8□□□□□ -1.8
MSH3P20585 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
MSH3P20585 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
MSH3P20585 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.79□□□□□ -1.8
MSH3P20585 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
MSH3P20585 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.79□□□□□ -1.8
MSH3P20585 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
MSH3P20585 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.79□□□□□ -1.8
MSH3P20585 MIR423-201ENST00000362201 94 ntBASIC3.79□□□□□ -1.8
MSH3P20585 RNU6-553P-201ENST00000364047 96 ntBASIC3.79□□□□□ -1.8
MSH3P20585 MIR506-201ENST00000384998 124 ntBASIC3.79□□□□□ -1.8
MSH3P20585 AL356967.1-201ENST00000406305 431 ntBASIC3.79□□□□□ -1.8
MSH3P20585 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
MSH3P20585 AL450338.1-201ENST00000407987 512 ntBASIC3.79□□□□□ -1.8
MSH3P20585 MIR1302-8-201ENST00000408342 128 ntBASIC3.79□□□□□ -1.8
MSH3P20585 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.79□□□□□ -1.8
MSH3P20585 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC3.79□□□□□ -1.8
MSH3P20585 TRBV24OR9-2-201ENST00000416632 435 ntBASIC3.79□□□□□ -1.8
MSH3P20585 TIMM9P2-201ENST00000419324 266 ntBASIC3.79□□□□□ -1.8
MSH3P20585 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC3.79□□□□□ -1.8
MSH3P20585 AC092017.2-201ENST00000427600 362 ntBASIC3.79□□□□□ -1.8
MSH3P20585 Z74696.2-201ENST00000436514 498 ntBASIC3.79□□□□□ -1.8
MSH3P20585 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC3.79□□□□□ -1.8
MSH3P20585 MTND2P20-201ENST00000440805 661 ntBASIC3.79□□□□□ -1.8
MSH3P20585 AL591503.2-201ENST00000442314 1005 ntBASIC3.79□□□□□ -1.8
MSH3P20585 MTCO3P20-201ENST00000454926 688 ntBASIC3.79□□□□□ -1.8
MSH3P20585 RN7SL93P-201ENST00000463035 293 ntBASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 86 ms