Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 AC023128.2-201ENST00000420880 1223 ntBASIC2.56□□□□□ -2
CPSF4O95639 FAM204CP-201ENST00000424489 642 ntBASIC2.56□□□□□ -2
CPSF4O95639 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC2.56□□□□□ -2
CPSF4O95639 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC2.56□□□□□ -2
CPSF4O95639 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC2.56□□□□□ -2
CPSF4O95639 AC112220.1-201ENST00000434628 355 ntBASIC2.56□□□□□ -2
CPSF4O95639 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC2.56□□□□□ -2
CPSF4O95639 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC2.56□□□□□ -2
CPSF4O95639 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC2.56□□□□□ -2
CPSF4O95639 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC2.56□□□□□ -2
CPSF4O95639 PTP4A1P6-201ENST00000531034 478 ntBASIC2.56□□□□□ -2
CPSF4O95639 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC2.56□□□□□ -2
CPSF4O95639 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC2.56□□□□□ -2
CPSF4O95639 OR8L1P-201ENST00000534005 955 ntBASIC2.56□□□□□ -2
CPSF4O95639 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC2.56□□□□□ -2
CPSF4O95639 AL355836.1-201ENST00000555951 870 ntBASIC2.56□□□□□ -2
CPSF4O95639 AC090751.1-201ENST00000566966 267 ntBASIC2.56□□□□□ -2
CPSF4O95639 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.56□□□□□ -2
CPSF4O95639 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC2.56□□□□□ -2
CPSF4O95639 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC2.56□□□□□ -2
CPSF4O95639 AC079610.2-201ENST00000604818 690 ntBASIC2.56□□□□□ -2
CPSF4O95639 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC2.56□□□□□ -2
CPSF4O95639 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC2.56□□□□□ -2
CPSF4O95639 U6.107-201ENST00000637108 79 ntBASIC2.56□□□□□ -2
CPSF4O95639 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC2.56□□□□□ -2
CPSF4O95639 AC021755.1-201ENST00000559747 1447 ntBASIC2.56□□□□□ -2
CPSF4O95639 AL672296.1-201ENST00000427780 2158 ntBASIC2.56□□□□□ -2
CPSF4O95639 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC2.56□□□□□ -2
CPSF4O95639 AL353746.1-201ENST00000566293 6881 ntBASIC2.55□□□□□ -2
CPSF4O95639 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
CPSF4O95639 RNA5SP391-201ENST00000363456 119 ntBASIC2.55□□□□□ -2
CPSF4O95639 RNA5SP210-201ENST00000391034 120 ntBASIC2.55□□□□□ -2
CPSF4O95639 SNORA48.5-201ENST00000391143 135 ntBASIC2.55□□□□□ -2
CPSF4O95639 SNORA48.8-201ENST00000391324 134 ntBASIC2.55□□□□□ -2
CPSF4O95639 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC2.55□□□□□ -2
CPSF4O95639 RPL36AP6-201ENST00000435770 321 ntBASIC2.55□□□□□ -2
CPSF4O95639 RPS7P5-201ENST00000441482 581 ntBASIC2.55□□□□□ -2
CPSF4O95639 COX6CP2-201ENST00000444980 225 ntBASIC2.55□□□□□ -2
CPSF4O95639 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC2.55□□□□□ -2
CPSF4O95639 AC089999.1-201ENST00000460336 374 ntBASIC2.55□□□□□ -2
CPSF4O95639 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC2.55□□□□□ -2
CPSF4O95639 MTCO1P30-201ENST00000515244 580 ntBASIC2.55□□□□□ -2
CPSF4O95639 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC2.55□□□□□ -2
CPSF4O95639 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC2.55□□□□□ -2
CPSF4O95639 MTCO3P13-201ENST00000577757 781 ntBASIC2.55□□□□□ -2
CPSF4O95639 MIR4635-201ENST00000583759 79 ntBASIC2.55□□□□□ -2
CPSF4O95639 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC2.55□□□□□ -2
CPSF4O95639 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC2.55□□□□□ -2
CPSF4O95639 LLPHP1-201ENST00000603571 367 ntBASIC2.55□□□□□ -2
CPSF4O95639 AC012468.1-201ENST00000604888 430 ntBASIC2.55□□□□□ -2
CPSF4O95639 AL118556.2-201ENST00000614375 824 ntBASIC2.55□□□□□ -2
CPSF4O95639 AC006065.5-201ENST00000623427 349 ntBASIC2.55□□□□□ -2
CPSF4O95639 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.55□□□□□ -2
CPSF4O95639 HPVC1-201ENST00000629899 1198 ntBASIC2.55□□□□□ -2
CPSF4O95639 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
CPSF4O95639 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.54□□□□□ -2
CPSF4O95639 AL049737.1-201ENST00000413920 1403 ntBASIC2.54□□□□□ -2
CPSF4O95639 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
CPSF4O95639 AL645568.2-201ENST00000432815 1337 ntBASIC2.54□□□□□ -2
CPSF4O95639 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
CPSF4O95639 AC022031.1-201ENST00000585985 2593 ntBASIC2.54□□□□□ -2
CPSF4O95639 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
CPSF4O95639 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC2.54□□□□□ -2
CPSF4O95639 RNU6-1005P-201ENST00000384519 107 ntBASIC2.54□□□□□ -2
CPSF4O95639 MIR153-1-201ENST00000384914 90 ntBASIC2.54□□□□□ -2
CPSF4O95639 AL138827.1-201ENST00000402666 306 ntBASIC2.54□□□□□ -2
CPSF4O95639 HNRNPDP2-201ENST00000406475 478 ntBASIC2.54□□□□□ -2
CPSF4O95639 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC2.54□□□□□ -2
CPSF4O95639 AL513175.2-201ENST00000422071 443 ntBASIC2.54□□□□□ -2
CPSF4O95639 AL139132.1-201ENST00000431587 344 ntBASIC2.54□□□□□ -2
CPSF4O95639 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC2.54□□□□□ -2
CPSF4O95639 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC2.54□□□□□ -2
CPSF4O95639 RPS27P5-201ENST00000444247 244 ntBASIC2.54□□□□□ -2
CPSF4O95639 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC2.54□□□□□ -2
CPSF4O95639 AC092685.1-201ENST00000447960 1243 ntBASIC2.54□□□□□ -2
CPSF4O95639 AC096992.1-201ENST00000459808 709 ntBASIC2.54□□□□□ -2
CPSF4O95639 SNRPGP3-201ENST00000469405 227 ntBASIC2.54□□□□□ -2
CPSF4O95639 RPL7P5-201ENST00000471472 736 ntBASIC2.54□□□□□ -2
CPSF4O95639 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.54□□□□□ -2
CPSF4O95639 AC117522.3-201ENST00000507974 584 ntBASIC2.54□□□□□ -2
CPSF4O95639 AC110792.2-201ENST00000510278 224 ntBASIC2.54□□□□□ -2
CPSF4O95639 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC2.54□□□□□ -2
CPSF4O95639 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC2.54□□□□□ -2
CPSF4O95639 COX6B1P6-201ENST00000522347 255 ntBASIC2.54□□□□□ -2
CPSF4O95639 OR4A45P-201ENST00000529954 901 ntBASIC2.54□□□□□ -2
CPSF4O95639 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC2.54□□□□□ -2
CPSF4O95639 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC2.54□□□□□ -2
CPSF4O95639 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.54□□□□□ -2
CPSF4O95639 CYCSP39-201ENST00000565821 309 ntBASIC2.54□□□□□ -2
CPSF4O95639 MIR3944-201ENST00000581277 108 ntBASIC2.54□□□□□ -2
CPSF4O95639 AC007179.3-201ENST00000604976 235 ntBASIC2.54□□□□□ -2
CPSF4O95639 MIR92B-201ENST00000607575 96 ntBASIC2.54□□□□□ -2
CPSF4O95639 AC245389.2-201ENST00000616023 576 ntBASIC2.54□□□□□ -2
CPSF4O95639 AC243756.2-201ENST00000618406 463 ntBASIC2.54□□□□□ -2
CPSF4O95639 AC242843.1-201ENST00000618702 573 ntBASIC2.54□□□□□ -2
CPSF4O95639 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC2.54□□□□□ -2
CPSF4O95639 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC2.54□□□□□ -2
CPSF4O95639 AL163152.1-201ENST00000642001 374 ntBASIC2.54□□□□□ -2
CPSF4O95639 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
CPSF4O95639 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 116.9 ms