Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 PABPC1P3-201ENST00000469174 459 ntBASIC4.53□□□□□ -1.68
VPS4BO75351 AL136126.1-201ENST00000473603 402 ntBASIC4.53□□□□□ -1.68
VPS4BO75351 AC104563.1-201ENST00000476147 376 ntBASIC4.53□□□□□ -1.68
VPS4BO75351 AC083829.1-201ENST00000503756 657 ntBASIC4.53□□□□□ -1.68
VPS4BO75351 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC4.53□□□□□ -1.68
VPS4BO75351 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS4BO75351 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS4BO75351 RNA5SP446-201ENST00000515955 82 ntBASIC4.53□□□□□ -1.68
VPS4BO75351 RNU6-430P-201ENST00000517078 107 ntBASIC4.53□□□□□ -1.68
VPS4BO75351 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS4BO75351 AC090151.1-201ENST00000520784 730 ntBASIC4.53□□□□□ -1.68
VPS4BO75351 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS4BO75351 DYNLL1P4-201ENST00000549314 266 ntBASIC4.53□□□□□ -1.68
VPS4BO75351 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS4BO75351 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS4BO75351 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS4BO75351 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC4.53□□□□□ -1.68
VPS4BO75351 MIR3913-1-201ENST00000577744 102 ntBASIC4.53□□□□□ -1.68
VPS4BO75351 AC020910.3-201ENST00000603701 874 ntBASIC4.53□□□□□ -1.68
VPS4BO75351 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS4BO75351 AL159169.3-201ENST00000608871 561 ntBASIC4.53□□□□□ -1.68
VPS4BO75351 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS4BO75351 AC136475.10-201ENST00000620253 385 ntBASIC4.53□□□□□ -1.68
VPS4BO75351 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS4BO75351 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS4BO75351 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS4BO75351 AC055839.1-201ENST00000634467 498 ntBASIC4.53□□□□□ -1.68
VPS4BO75351 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
VPS4BO75351 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
VPS4BO75351 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS4BO75351 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
VPS4BO75351 AL672167.1-203ENST00000641299 2975 ntBASIC4.53□□□□□ -1.68
VPS4BO75351 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS4BO75351 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.53□□□□□ -1.68
VPS4BO75351 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
VPS4BO75351 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
VPS4BO75351 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
VPS4BO75351 KPNA2P2-201ENST00000419546 1489 ntBASIC4.52□□□□□ -1.69
VPS4BO75351 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
VPS4BO75351 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC4.52□□□□□ -1.69
VPS4BO75351 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS4BO75351 RNU6-146P-201ENST00000384602 108 ntBASIC4.52□□□□□ -1.69
VPS4BO75351 MIR23B-201ENST00000384832 97 ntBASIC4.52□□□□□ -1.69
VPS4BO75351 MIR181A1-201ENST00000385026 110 ntBASIC4.52□□□□□ -1.69
VPS4BO75351 U3.30-201ENST00000391308 210 ntBASIC4.52□□□□□ -1.69
VPS4BO75351 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS4BO75351 SSXP10-201ENST00000402595 565 ntBASIC4.52□□□□□ -1.69
VPS4BO75351 RN7SKP106-201ENST00000410832 272 ntBASIC4.52□□□□□ -1.69
VPS4BO75351 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC4.52□□□□□ -1.69
VPS4BO75351 USP9YP18-201ENST00000425912 695 ntBASIC4.52□□□□□ -1.69
VPS4BO75351 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS4BO75351 NRBF2P3-201ENST00000432731 865 ntBASIC4.52□□□□□ -1.69
VPS4BO75351 GAPDHP17-201ENST00000449858 1001 ntBASIC4.52□□□□□ -1.69
VPS4BO75351 Z82190.1-201ENST00000454534 490 ntBASIC4.52□□□□□ -1.69
VPS4BO75351 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS4BO75351 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS4BO75351 RPS7P7-201ENST00000463499 571 ntBASIC4.52□□□□□ -1.69
VPS4BO75351 RPS20P21-201ENST00000466859 343 ntBASIC4.52□□□□□ -1.69
VPS4BO75351 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
VPS4BO75351 HMGB1P36-201ENST00000487709 576 ntBASIC4.52□□□□□ -1.69
VPS4BO75351 RNF138P1-201ENST00000502765 546 ntBASIC4.52□□□□□ -1.69
VPS4BO75351 NDUFB4P2-201ENST00000509515 391 ntBASIC4.52□□□□□ -1.69
VPS4BO75351 AC110792.2-201ENST00000510278 224 ntBASIC4.52□□□□□ -1.69
VPS4BO75351 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC4.52□□□□□ -1.69
VPS4BO75351 AC093677.1-201ENST00000514414 678 ntBASIC4.52□□□□□ -1.69
VPS4BO75351 AC016065.2-201ENST00000514530 444 ntBASIC4.52□□□□□ -1.69
VPS4BO75351 RN7SKP21-201ENST00000516503 220 ntBASIC4.52□□□□□ -1.69
VPS4BO75351 DEFB108A-201ENST00000530110 222 ntBASIC4.52□□□□□ -1.69
VPS4BO75351 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS4BO75351 AP003122.4-201ENST00000530980 758 ntBASIC4.52□□□□□ -1.69
VPS4BO75351 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS4BO75351 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS4BO75351 RPL21P5-201ENST00000554662 472 ntBASIC4.52□□□□□ -1.69
VPS4BO75351 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS4BO75351 TPMTP1-201ENST00000592307 737 ntBASIC4.52□□□□□ -1.69
VPS4BO75351 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS4BO75351 AL606834.2-201ENST00000602954 668 ntBASIC4.52□□□□□ -1.69
VPS4BO75351 AL356218.2-201ENST00000605264 187 ntBASIC4.52□□□□□ -1.69
VPS4BO75351 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.52□□□□□ -1.69
VPS4BO75351 AC008250.2-201ENST00000615261 205 ntBASIC4.52□□□□□ -1.69
VPS4BO75351 AC022306.2-201ENST00000617563 647 ntBASIC4.52□□□□□ -1.69
VPS4BO75351 BMS1P21-201ENST00000634565 365 ntBASIC4.52□□□□□ -1.69
VPS4BO75351 AC097714.1-201ENST00000511272 1647 ntBASIC4.52□□□□□ -1.69
VPS4BO75351 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.52□□□□□ -1.69
VPS4BO75351 DHX40P1-201ENST00000588725 1412 ntBASIC4.52□□□□□ -1.69
VPS4BO75351 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
VPS4BO75351 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.52□□□□□ -1.69
VPS4BO75351 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS4BO75351 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS4BO75351 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
VPS4BO75351 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
VPS4BO75351 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
VPS4BO75351 AC006971.1-201ENST00000407916 4486 ntBASIC4.51□□□□□ -1.69
VPS4BO75351 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC4.51□□□□□ -1.69
VPS4BO75351 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.51□□□□□ -1.69
VPS4BO75351 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS4BO75351 SNORA57.1-201ENST00000391227 145 ntBASIC4.51□□□□□ -1.69
VPS4BO75351 RPL17P50-201ENST00000396131 546 ntBASIC4.51□□□□□ -1.69
VPS4BO75351 Y_RNA.604-201ENST00000410574 102 ntBASIC4.51□□□□□ -1.69
VPS4BO75351 AC022028.1-201ENST00000412054 408 ntBASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 125.5 ms