Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC3.3□□□□□ -1.88
FOXA2Q9Y261 AC022655.2-201ENST00000577280 318 ntBASIC3.3□□□□□ -1.88
FOXA2Q9Y261 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC3.3□□□□□ -1.88
FOXA2Q9Y261 AL161729.3-201ENST00000603533 673 ntBASIC3.3□□□□□ -1.88
FOXA2Q9Y261 AC097478.2-201ENST00000610572 514 ntBASIC3.3□□□□□ -1.88
FOXA2Q9Y261 MIR6716-201ENST00000613413 80 ntBASIC3.3□□□□□ -1.88
FOXA2Q9Y261 AL110115.1-201ENST00000614396 364 ntBASIC3.3□□□□□ -1.88
FOXA2Q9Y261 AL391261.4-201ENST00000616012 481 ntBASIC3.3□□□□□ -1.88
FOXA2Q9Y261 AL596245.1-201ENST00000618994 362 ntBASIC3.3□□□□□ -1.88
FOXA2Q9Y261 MIR8059-201ENST00000620427 81 ntBASIC3.3□□□□□ -1.88
FOXA2Q9Y261 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.3□□□□□ -1.88
FOXA2Q9Y261 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
FOXA2Q9Y261 MAPK10-373ENST00000641983 6772 ntBASIC3.3□□□□□ -1.88
FOXA2Q9Y261 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC3.3□□□□□ -1.88
FOXA2Q9Y261 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
FOXA2Q9Y261 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
FOXA2Q9Y261 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.3□□□□□ -1.88
FOXA2Q9Y261 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.29□□□□□ -1.88
FOXA2Q9Y261 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 RNU11-4P-201ENST00000391149 133 ntBASIC3.29□□□□□ -1.88
FOXA2Q9Y261 PTMAP5-201ENST00000393073 333 ntBASIC3.29□□□□□ -1.88
FOXA2Q9Y261 AL049693.1-201ENST00000402760 611 ntBASIC3.29□□□□□ -1.88
FOXA2Q9Y261 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 AC108032.1-201ENST00000416706 207 ntBASIC3.29□□□□□ -1.88
FOXA2Q9Y261 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 GAS5-208ENST00000425771 242 ntTSL 3 BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 AL035246.1-201ENST00000433554 1255 ntBASIC3.29□□□□□ -1.88
FOXA2Q9Y261 SETP5-201ENST00000437270 562 ntBASIC3.29□□□□□ -1.88
FOXA2Q9Y261 AL356535.1-201ENST00000440335 398 ntBASIC3.29□□□□□ -1.88
FOXA2Q9Y261 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 NUTF2P3-201ENST00000448540 384 ntBASIC3.29□□□□□ -1.88
FOXA2Q9Y261 VN1R40P-201ENST00000455196 941 ntBASIC3.29□□□□□ -1.88
FOXA2Q9Y261 BX322784.1-201ENST00000455793 1077 ntBASIC3.29□□□□□ -1.88
FOXA2Q9Y261 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 USP9YP25-201ENST00000457708 443 ntBASIC3.29□□□□□ -1.88
FOXA2Q9Y261 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 AF213884.1-201ENST00000488102 463 ntBASIC3.29□□□□□ -1.88
FOXA2Q9Y261 AC069499.1-201ENST00000489433 509 ntBASIC3.29□□□□□ -1.88
FOXA2Q9Y261 AC026979.1-201ENST00000492525 396 ntBASIC3.29□□□□□ -1.88
FOXA2Q9Y261 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 AP003730.1-201ENST00000524605 285 ntBASIC3.29□□□□□ -1.88
FOXA2Q9Y261 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 CYCSP2-201ENST00000558168 301 ntBASIC3.29□□□□□ -1.88
FOXA2Q9Y261 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 OR4K8P-201ENST00000578842 1048 ntBASIC3.29□□□□□ -1.88
FOXA2Q9Y261 AC012417.1-201ENST00000582307 1039 ntBASIC3.29□□□□□ -1.88
FOXA2Q9Y261 MIR3939-201ENST00000582614 106 ntBASIC3.29□□□□□ -1.88
FOXA2Q9Y261 MIR3138-201ENST00000585238 82 ntBASIC3.29□□□□□ -1.88
FOXA2Q9Y261 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 BDH2P1-201ENST00000602288 736 ntBASIC3.29□□□□□ -1.88
FOXA2Q9Y261 AC006254.3-201ENST00000603353 884 ntBASIC3.29□□□□□ -1.88
FOXA2Q9Y261 AL365503.1-201ENST00000605247 905 ntBASIC3.29□□□□□ -1.88
FOXA2Q9Y261 AC110741.2-201ENST00000605278 268 ntBASIC3.29□□□□□ -1.88
FOXA2Q9Y261 AC012443.1-201ENST00000605605 231 ntBASIC3.29□□□□□ -1.88
FOXA2Q9Y261 AC080013.3-201ENST00000606839 578 ntBASIC3.29□□□□□ -1.88
FOXA2Q9Y261 AC005962.2-201ENST00000611427 652 ntBASIC3.29□□□□□ -1.88
FOXA2Q9Y261 AC090246.1-201ENST00000616499 426 ntBASIC3.29□□□□□ -1.88
FOXA2Q9Y261 AL357080.1-201ENST00000617394 239 ntBASIC3.29□□□□□ -1.88
FOXA2Q9Y261 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 MIR6758-201ENST00000620653 63 ntBASIC3.29□□□□□ -1.88
FOXA2Q9Y261 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 MIR6830-201ENST00000636015 70 ntBASIC3.29□□□□□ -1.88
FOXA2Q9Y261 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 AC002546.1-201ENST00000588041 2504 ntBASIC3.29□□□□□ -1.88
FOXA2Q9Y261 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC3.29□□□□□ -1.88
FOXA2Q9Y261 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
FOXA2Q9Y261 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
FOXA2Q9Y261 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
FOXA2Q9Y261 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
FOXA2Q9Y261 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC3.28□□□□□ -1.88
FOXA2Q9Y261 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
FOXA2Q9Y261 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
FOXA2Q9Y261 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
FOXA2Q9Y261 SNORA72.3-201ENST00000365074 132 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
FOXA2Q9Y261 MIR1251-201ENST00000408552 70 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 RPS15AP38-201ENST00000413110 372 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms