Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
DDX28Q9NUL7 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
DDX28Q9NUL7 Y_RNA.25-201ENST00000362528 102 ntBASIC3.49□□□□□ -1.85
DDX28Q9NUL7 RNU6-263P-201ENST00000363811 107 ntBASIC3.49□□□□□ -1.85
DDX28Q9NUL7 RNA5SP283-201ENST00000365604 119 ntBASIC3.49□□□□□ -1.85
DDX28Q9NUL7 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC3.49□□□□□ -1.85
DDX28Q9NUL7 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC3.49□□□□□ -1.85
DDX28Q9NUL7 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC3.49□□□□□ -1.85
DDX28Q9NUL7 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC3.49□□□□□ -1.85
DDX28Q9NUL7 RNU6-657P-201ENST00000383904 107 ntBASIC3.49□□□□□ -1.85
DDX28Q9NUL7 RPL31P1-201ENST00000398116 372 ntBASIC3.49□□□□□ -1.85
DDX28Q9NUL7 RNU4-78P-201ENST00000410940 126 ntBASIC3.49□□□□□ -1.85
DDX28Q9NUL7 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.49□□□□□ -1.85
DDX28Q9NUL7 RPL7AP73-201ENST00000413490 353 ntBASIC3.49□□□□□ -1.85
DDX28Q9NUL7 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.49□□□□□ -1.85
DDX28Q9NUL7 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC3.49□□□□□ -1.85
DDX28Q9NUL7 AC106883.1-201ENST00000418805 562 ntBASIC3.49□□□□□ -1.85
DDX28Q9NUL7 AC013410.2-201ENST00000422627 201 ntBASIC3.49□□□□□ -1.85
DDX28Q9NUL7 AL513174.1-201ENST00000423182 629 ntBASIC3.49□□□□□ -1.85
DDX28Q9NUL7 OR5BE1P-201ENST00000425977 939 ntBASIC3.49□□□□□ -1.85
DDX28Q9NUL7 AL451062.2-201ENST00000427515 271 ntBASIC3.49□□□□□ -1.85
DDX28Q9NUL7 HMGB1P37-201ENST00000439613 609 ntBASIC3.49□□□□□ -1.85
DDX28Q9NUL7 HMGB3P8-201ENST00000449709 577 ntBASIC3.49□□□□□ -1.85
DDX28Q9NUL7 RFC5P1-201ENST00000454419 874 ntBASIC3.49□□□□□ -1.85
DDX28Q9NUL7 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC3.49□□□□□ -1.85
DDX28Q9NUL7 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC3.49□□□□□ -1.85
DDX28Q9NUL7 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.49□□□□□ -1.85
DDX28Q9NUL7 PLGLA-201ENST00000465668 449 ntBASIC3.49□□□□□ -1.85
DDX28Q9NUL7 NCOR1P1-202ENST00000486162 291 ntBASIC3.49□□□□□ -1.85
DDX28Q9NUL7 RPL7P24-201ENST00000493052 752 ntBASIC3.49□□□□□ -1.85
DDX28Q9NUL7 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC3.49□□□□□ -1.85
DDX28Q9NUL7 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.49□□□□□ -1.85
DDX28Q9NUL7 ARL2BPP6-201ENST00000512757 439 ntBASIC3.49□□□□□ -1.85
DDX28Q9NUL7 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC3.49□□□□□ -1.85
DDX28Q9NUL7 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
DDX28Q9NUL7 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC3.49□□□□□ -1.85
DDX28Q9NUL7 AC091516.1-201ENST00000549191 703 ntBASIC3.49□□□□□ -1.85
DDX28Q9NUL7 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC3.49□□□□□ -1.85
DDX28Q9NUL7 AC008127.2-201ENST00000549925 1075 ntBASIC3.49□□□□□ -1.85
DDX28Q9NUL7 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC3.49□□□□□ -1.85
DDX28Q9NUL7 MIR3690-201ENST00000580266 75 ntBASIC3.49□□□□□ -1.85
DDX28Q9NUL7 MIR4425-201ENST00000580572 84 ntBASIC3.49□□□□□ -1.85
DDX28Q9NUL7 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC3.49□□□□□ -1.85
DDX28Q9NUL7 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.49□□□□□ -1.85
DDX28Q9NUL7 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.49□□□□□ -1.85
DDX28Q9NUL7 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC3.49□□□□□ -1.85
DDX28Q9NUL7 MIR6868-201ENST00000611215 58 ntBASIC3.49□□□□□ -1.85
DDX28Q9NUL7 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
DDX28Q9NUL7 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC3.49□□□□□ -1.85
DDX28Q9NUL7 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC3.49□□□□□ -1.85
DDX28Q9NUL7 AC091905.1-201ENST00000624400 311 ntBASIC3.49□□□□□ -1.85
DDX28Q9NUL7 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.49□□□□□ -1.85
DDX28Q9NUL7 SNORA50A-202ENST00000629536 136 ntBASIC3.49□□□□□ -1.85
DDX28Q9NUL7 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
DDX28Q9NUL7 OR5BE1P-202ENST00000641168 1176 ntBASIC3.49□□□□□ -1.85
DDX28Q9NUL7 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.49□□□□□ -1.85
DDX28Q9NUL7 AC007256.1-201ENST00000392253 2765 ntBASIC3.49□□□□□ -1.85
DDX28Q9NUL7 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.49□□□□□ -1.85
DDX28Q9NUL7 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
DDX28Q9NUL7 ZNF826P-207ENST00000622273 1910 ntBASIC3.48□□□□□ -1.85
DDX28Q9NUL7 AC107982.1-201ENST00000507171 1300 ntBASIC3.48□□□□□ -1.85
DDX28Q9NUL7 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
DDX28Q9NUL7 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
DDX28Q9NUL7 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
DDX28Q9NUL7 RNU6-335P-201ENST00000364563 113 ntBASIC3.48□□□□□ -1.85
DDX28Q9NUL7 SNORD82-201ENST00000365530 70 ntBASIC3.48□□□□□ -1.85
DDX28Q9NUL7 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
DDX28Q9NUL7 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.48□□□□□ -1.85
DDX28Q9NUL7 RPL32P23-201ENST00000397237 405 ntBASIC3.48□□□□□ -1.85
DDX28Q9NUL7 SLC9B1P2-201ENST00000398120 1184 ntBASIC3.48□□□□□ -1.85
DDX28Q9NUL7 AL136310.1-201ENST00000404926 654 ntBASIC3.48□□□□□ -1.85
DDX28Q9NUL7 AL583834.1-201ENST00000406943 343 ntBASIC3.48□□□□□ -1.85
DDX28Q9NUL7 RNU2-42P-201ENST00000410697 113 ntBASIC3.48□□□□□ -1.85
DDX28Q9NUL7 MTATP6P20-201ENST00000414147 562 ntBASIC3.48□□□□□ -1.85
DDX28Q9NUL7 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.48□□□□□ -1.85
DDX28Q9NUL7 OFD1P12Y-201ENST00000427963 1207 ntBASIC3.48□□□□□ -1.85
DDX28Q9NUL7 HIGD1AP4-201ENST00000430194 280 ntBASIC3.48□□□□□ -1.85
DDX28Q9NUL7 OFD1P13Y-201ENST00000431179 1232 ntBASIC3.48□□□□□ -1.85
DDX28Q9NUL7 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC3.48□□□□□ -1.85
DDX28Q9NUL7 HMGB1P12-201ENST00000438594 598 ntBASIC3.48□□□□□ -1.85
DDX28Q9NUL7 OR10R1P-201ENST00000441524 1141 ntBASIC3.48□□□□□ -1.85
DDX28Q9NUL7 AL589880.1-201ENST00000448271 287 ntBASIC3.48□□□□□ -1.85
DDX28Q9NUL7 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.48□□□□□ -1.85
DDX28Q9NUL7 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
DDX28Q9NUL7 HMGN2P16-201ENST00000456802 261 ntBASIC3.48□□□□□ -1.85
DDX28Q9NUL7 RPL5P24-201ENST00000463742 885 ntBASIC3.48□□□□□ -1.85
DDX28Q9NUL7 UBE2V1P12-201ENST00000503954 474 ntBASIC3.48□□□□□ -1.85
DDX28Q9NUL7 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.48□□□□□ -1.85
DDX28Q9NUL7 AC010460.2-201ENST00000509054 677 ntBASIC3.48□□□□□ -1.85
DDX28Q9NUL7 RNU6-1225P-201ENST00000516336 65 ntBASIC3.48□□□□□ -1.85
DDX28Q9NUL7 RN7SKP244-201ENST00000516513 307 ntBASIC3.48□□□□□ -1.85
DDX28Q9NUL7 RN7SKP60-201ENST00000516985 239 ntBASIC3.48□□□□□ -1.85
DDX28Q9NUL7 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3.48□□□□□ -1.85
DDX28Q9NUL7 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC3.48□□□□□ -1.85
DDX28Q9NUL7 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.48□□□□□ -1.85
DDX28Q9NUL7 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC3.48□□□□□ -1.85
DDX28Q9NUL7 AC006130.2-201ENST00000586202 326 ntBASIC3.48□□□□□ -1.85
DDX28Q9NUL7 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.48□□□□□ -1.85
DDX28Q9NUL7 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.48□□□□□ -1.85
DDX28Q9NUL7 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms