Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RPL12P25-202ENST00000598100 674 ntBASIC4.85□□□□□ -1.63
USP39Q53GS9 AC005191.1-201ENST00000603950 358 ntBASIC4.85□□□□□ -1.63
USP39Q53GS9 AL365204.3-201ENST00000612448 685 ntBASIC4.85□□□□□ -1.63
USP39Q53GS9 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
USP39Q53GS9 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
USP39Q53GS9 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC4.85□□□□□ -1.63
USP39Q53GS9 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.85□□□□□ -1.63
USP39Q53GS9 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
USP39Q53GS9 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.85□□□□□ -1.63
USP39Q53GS9 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
USP39Q53GS9 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
USP39Q53GS9 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
USP39Q53GS9 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
USP39Q53GS9 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
USP39Q53GS9 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
USP39Q53GS9 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.84□□□□□ -1.63
USP39Q53GS9 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
USP39Q53GS9 ANAPC1P1-201ENST00000426186 2145 ntBASIC4.84□□□□□ -1.63
USP39Q53GS9 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.84□□□□□ -1.63
USP39Q53GS9 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
USP39Q53GS9 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.84□□□□□ -1.63
USP39Q53GS9 AL645937.1-201ENST00000641739 1652 ntBASIC4.84□□□□□ -1.63
USP39Q53GS9 AC091046.3-201ENST00000631455 1574 ntBASIC4.84□□□□□ -1.63
USP39Q53GS9 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
USP39Q53GS9 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.84□□□□□ -1.63
USP39Q53GS9 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC4.84□□□□□ -1.63
USP39Q53GS9 OR4G11P-202ENST00000642116 1414 ntBASIC4.84□□□□□ -1.63
USP39Q53GS9 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
USP39Q53GS9 Y_RNA.1-201ENST00000352915 104 ntBASIC4.84□□□□□ -1.63
USP39Q53GS9 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
USP39Q53GS9 RNU6-146P-201ENST00000384602 108 ntBASIC4.84□□□□□ -1.63
USP39Q53GS9 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
USP39Q53GS9 U8.14-201ENST00000390843 143 ntBASIC4.84□□□□□ -1.63
USP39Q53GS9 JKAMPP1-201ENST00000413804 919 ntBASIC4.84□□□□□ -1.63
USP39Q53GS9 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.84□□□□□ -1.63
USP39Q53GS9 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC4.84□□□□□ -1.63
USP39Q53GS9 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC4.84□□□□□ -1.63
USP39Q53GS9 AL953862.1-201ENST00000423016 168 ntBASIC4.84□□□□□ -1.63
USP39Q53GS9 RPL12P34-201ENST00000424532 479 ntBASIC4.84□□□□□ -1.63
USP39Q53GS9 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC4.84□□□□□ -1.63
USP39Q53GS9 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
USP39Q53GS9 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC4.84□□□□□ -1.63
USP39Q53GS9 BMS1P19-201ENST00000433925 393 ntBASIC4.84□□□□□ -1.63
USP39Q53GS9 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC4.84□□□□□ -1.63
USP39Q53GS9 AL450023.3-201ENST00000440592 271 ntBASIC4.84□□□□□ -1.63
USP39Q53GS9 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC4.84□□□□□ -1.63
USP39Q53GS9 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.84□□□□□ -1.63
USP39Q53GS9 AC079448.1-201ENST00000449377 373 ntBASIC4.84□□□□□ -1.63
USP39Q53GS9 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.84□□□□□ -1.63
USP39Q53GS9 ACTR3P3-201ENST00000480448 893 ntBASIC4.84□□□□□ -1.63
USP39Q53GS9 EEF1A1P25-201ENST00000495704 1267 ntBASIC4.84□□□□□ -1.63
USP39Q53GS9 AC114967.1-201ENST00000504890 259 ntBASIC4.84□□□□□ -1.63
USP39Q53GS9 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC4.84□□□□□ -1.63
USP39Q53GS9 KCTD9P2-201ENST00000512203 1013 ntBASIC4.84□□□□□ -1.63
USP39Q53GS9 RNU6-1261P-201ENST00000517194 104 ntBASIC4.84□□□□□ -1.63
USP39Q53GS9 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC4.84□□□□□ -1.63
USP39Q53GS9 AL512310.1-201ENST00000548639 172 ntBASIC4.84□□□□□ -1.63
USP39Q53GS9 CYCSP2-201ENST00000558168 301 ntBASIC4.84□□□□□ -1.63
USP39Q53GS9 AC107954.1-201ENST00000565906 727 ntBASIC4.84□□□□□ -1.63
USP39Q53GS9 AC141257.3-201ENST00000572906 215 ntBASIC4.84□□□□□ -1.63
USP39Q53GS9 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC4.84□□□□□ -1.63
USP39Q53GS9 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.84□□□□□ -1.63
USP39Q53GS9 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
USP39Q53GS9 PRELID3BP8-201ENST00000604148 295 ntBASIC4.84□□□□□ -1.63
USP39Q53GS9 AL360085.1-201ENST00000604713 532 ntBASIC4.84□□□□□ -1.63
USP39Q53GS9 BNIP3P10-201ENST00000605360 577 ntBASIC4.84□□□□□ -1.63
USP39Q53GS9 AC103710.4-201ENST00000609301 899 ntBASIC4.84□□□□□ -1.63
USP39Q53GS9 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC4.84□□□□□ -1.63
USP39Q53GS9 AC068831.8-201ENST00000620171 435 ntBASIC4.84□□□□□ -1.63
USP39Q53GS9 AL160413.1-201ENST00000622780 310 ntBASIC4.84□□□□□ -1.63
USP39Q53GS9 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC4.84□□□□□ -1.63
USP39Q53GS9 AC119674.1-212ENST00000641155 993 ntBASIC4.84□□□□□ -1.63
USP39Q53GS9 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.84□□□□□ -1.63
USP39Q53GS9 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC4.84□□□□□ -1.63
USP39Q53GS9 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
USP39Q53GS9 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.64
USP39Q53GS9 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.84□□□□□ -1.64
USP39Q53GS9 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC4.84□□□□□ -1.64
USP39Q53GS9 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.64
USP39Q53GS9 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
USP39Q53GS9 AC000123.3-201ENST00000624029 4975 ntBASIC4.84□□□□□ -1.64
USP39Q53GS9 CASC19-204ENST00000641001 2055 ntBASIC4.84□□□□□ -1.64
USP39Q53GS9 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.64
USP39Q53GS9 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.84□□□□□ -1.64
USP39Q53GS9 Z95327.2-201ENST00000414579 1873 ntBASIC4.83□□□□□ -1.64
USP39Q53GS9 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC4.83□□□□□ -1.64
USP39Q53GS9 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC4.83□□□□□ -1.64
USP39Q53GS9 AL592148.3-201ENST00000608771 2646 ntBASIC4.83□□□□□ -1.64
USP39Q53GS9 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
USP39Q53GS9 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.83□□□□□ -1.64
USP39Q53GS9 CCT4P2-201ENST00000233836 1548 ntBASIC4.83□□□□□ -1.64
USP39Q53GS9 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
USP39Q53GS9 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
USP39Q53GS9 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
USP39Q53GS9 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.83□□□□□ -1.64
USP39Q53GS9 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC4.83□□□□□ -1.64
USP39Q53GS9 RNU6-532P-201ENST00000384318 107 ntBASIC4.83□□□□□ -1.64
USP39Q53GS9 RNU6-878P-201ENST00000384578 110 ntBASIC4.83□□□□□ -1.64
USP39Q53GS9 RNA5SP397-201ENST00000391323 118 ntBASIC4.83□□□□□ -1.64
USP39Q53GS9 AL357515.1-201ENST00000402967 542 ntBASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms