Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 AC091834.1-201ENST00000614543 472 ntBASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 AC083809.1-201ENST00000615051 472 ntBASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 U6atac.1-201ENST00000616025 117 ntBASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 AC091905.2-201ENST00000623143 306 ntBASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 AP002001.2-201ENST00000529025 1469 ntBASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
PTCHD3Q3KNS1 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 AC092447.10-201ENST00000620607 1652 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 AC139769.1-204ENST00000472297 1931 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 AC068254.2-201ENST00000623938 3577 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 RNU6-28P-201ENST00000362378 107 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 RNU6-343P-201ENST00000364709 104 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 MIR659-201ENST00000384963 97 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 RPL31P1-201ENST00000398116 372 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 SDHCP2-201ENST00000398565 501 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 TANK-206ENST00000406287 875 ntTSL 5 BASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 RPS3AP3-201ENST00000411933 242 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 OR8F1P-201ENST00000425243 930 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 AL732292.1-201ENST00000426692 226 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 RPS12P10-201ENST00000427031 377 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 AC008065.1-201ENST00000428525 348 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 AC091390.1-201ENST00000433904 331 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 AL162591.2-201ENST00000449634 317 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 AC005297.2-201ENST00000450430 606 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 MTCO1P42-201ENST00000457379 726 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 KLF3P2-201ENST00000465138 268 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 AC022795.1-201ENST00000473808 480 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 TMED11P-201ENST00000479478 690 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 ACTR3P3-201ENST00000480448 893 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 AC093267.1-201ENST00000489176 961 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 AC105252.1-201ENST00000503089 286 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 AC134698.5-201ENST00000519444 336 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 PDCD5P1-201ENST00000543528 309 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 AC087481.2-201ENST00000565492 330 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 AC009977.1-201ENST00000586015 570 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 BPIFA4P-203ENST00000603168 689 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 AC090578.1-201ENST00000604955 591 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 AL390208.1-201ENST00000605885 644 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 AC113194.1-201ENST00000606037 500 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 AC026368.1-201ENST00000614934 690 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 NXPH1-205ENST00000602349 1953 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 CCT4P2-201ENST00000233836 1548 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 CPHL1P-201ENST00000461341 3407 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 LINC00622-201ENST00000562811 1570 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 AL049780.3-201ENST00000624612 1583 ntBASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.39□□□□□ -1.71
PTCHD3Q3KNS1 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
PTCHD3Q3KNS1 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.38□□□□□ -1.71
PTCHD3Q3KNS1 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.38□□□□□ -1.71
PTCHD3Q3KNS1 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
PTCHD3Q3KNS1 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
PTCHD3Q3KNS1 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.38□□□□□ -1.71
PTCHD3Q3KNS1 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
PTCHD3Q3KNS1 MTND5P26-201ENST00000426018 1752 ntBASIC4.38□□□□□ -1.71
PTCHD3Q3KNS1 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC4.38□□□□□ -1.71
PTCHD3Q3KNS1 AC011155.1-201ENST00000316512 456 ntBASIC4.38□□□□□ -1.71
PTCHD3Q3KNS1 RNU1-94P-201ENST00000362627 173 ntBASIC4.38□□□□□ -1.71
PTCHD3Q3KNS1 RNU6-744P-201ENST00000365557 107 ntBASIC4.38□□□□□ -1.71
PTCHD3Q3KNS1 RNU1-63P-201ENST00000383902 164 ntBASIC4.38□□□□□ -1.71
PTCHD3Q3KNS1 RNU6-1316P-201ENST00000384242 108 ntBASIC4.38□□□□□ -1.71
PTCHD3Q3KNS1 RNU6-809P-201ENST00000384461 107 ntBASIC4.38□□□□□ -1.71
PTCHD3Q3KNS1 SLC9B1P2-201ENST00000398120 1184 ntBASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms