Protein–RNA interactions for Protein: Q15858

SCN9A, Sodium channel protein type 9 subunit alpha, humanhuman

Predictions only

Length 1,988 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9AQ15858 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
SCN9AQ15858 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.04□□□□□ -1.92
SCN9AQ15858 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.04□□□□□ -1.92
SCN9AQ15858 AC138915.3-201ENST00000562908 1389 ntBASIC3.04□□□□□ -1.92
SCN9AQ15858 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
SCN9AQ15858 OR51A3P-201ENST00000413596 924 ntBASIC3.04□□□□□ -1.92
SCN9AQ15858 Z98742.3-201ENST00000418637 326 ntBASIC3.04□□□□□ -1.92
SCN9AQ15858 AC012498.1-201ENST00000424037 437 ntBASIC3.04□□□□□ -1.92
SCN9AQ15858 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC3.04□□□□□ -1.92
SCN9AQ15858 MTND2P2-201ENST00000434633 945 ntBASIC3.04□□□□□ -1.92
SCN9AQ15858 FAM103A2P-201ENST00000444122 354 ntBASIC3.04□□□□□ -1.92
SCN9AQ15858 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC3.04□□□□□ -1.92
SCN9AQ15858 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC3.04□□□□□ -1.92
SCN9AQ15858 SNORA9.3-201ENST00000516383 129 ntBASIC3.04□□□□□ -1.92
SCN9AQ15858 IGHVIII-38-1-201ENST00000521454 282 ntBASIC3.04□□□□□ -1.92
SCN9AQ15858 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC3.04□□□□□ -1.92
SCN9AQ15858 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC3.04□□□□□ -1.92
SCN9AQ15858 BDH2P1-201ENST00000602288 736 ntBASIC3.04□□□□□ -1.92
SCN9AQ15858 AL158827.2-201ENST00000602494 330 ntBASIC3.04□□□□□ -1.92
SCN9AQ15858 AC007938.3-201ENST00000604965 623 ntBASIC3.04□□□□□ -1.92
SCN9AQ15858 AL133370.2-201ENST00000619934 439 ntBASIC3.04□□□□□ -1.92
SCN9AQ15858 AL691447.3-201ENST00000635020 330 ntBASIC3.04□□□□□ -1.92
SCN9AQ15858 FRG1DP-201ENST00000635586 771 ntBASIC3.04□□□□□ -1.92
SCN9AQ15858 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.04□□□□□ -1.92
SCN9AQ15858 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.04□□□□□ -1.92
SCN9AQ15858 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
SCN9AQ15858 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
SCN9AQ15858 AL590290.1-201ENST00000405336 380 ntBASIC3.03□□□□□ -1.92
SCN9AQ15858 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.03□□□□□ -1.92
SCN9AQ15858 AC080125.1-201ENST00000414888 684 ntBASIC3.03□□□□□ -1.92
SCN9AQ15858 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.03□□□□□ -1.92
SCN9AQ15858 MTND4LP13-201ENST00000425022 298 ntBASIC3.03□□□□□ -1.92
SCN9AQ15858 AL356320.1-201ENST00000429616 163 ntBASIC3.03□□□□□ -1.92
SCN9AQ15858 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.03□□□□□ -1.92
SCN9AQ15858 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC3.03□□□□□ -1.92
SCN9AQ15858 AP000867.2-201ENST00000532468 320 ntBASIC3.03□□□□□ -1.92
SCN9AQ15858 AL133271.1-201ENST00000538229 291 ntBASIC3.03□□□□□ -1.92
SCN9AQ15858 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC3.03□□□□□ -1.92
SCN9AQ15858 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.03□□□□□ -1.92
SCN9AQ15858 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.03□□□□□ -1.92
SCN9AQ15858 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.03□□□□□ -1.92
SCN9AQ15858 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.03□□□□□ -1.92
SCN9AQ15858 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.03□□□□□ -1.92
SCN9AQ15858 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
SCN9AQ15858 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
SCN9AQ15858 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
SCN9AQ15858 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.03□□□□□ -1.92
SCN9AQ15858 OR8X1P-201ENST00000534542 869 ntBASIC3.03□□□□□ -1.92
SCN9AQ15858 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.03□□□□□ -1.92
SCN9AQ15858 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC3.03□□□□□ -1.92
SCN9AQ15858 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC3.03□□□□□ -1.92
SCN9AQ15858 AC123786.2-201ENST00000603459 275 ntBASIC3.03□□□□□ -1.92
SCN9AQ15858 AC098826.3-201ENST00000603823 466 ntBASIC3.03□□□□□ -1.92
SCN9AQ15858 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC3.03□□□□□ -1.92
SCN9AQ15858 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC3.03□□□□□ -1.92
SCN9AQ15858 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.02□□□□□ -1.93
SCN9AQ15858 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
SCN9AQ15858 LSM5-206ENST00000409987 504 ntTSL 5 BASIC3.02□□□□□ -1.93
SCN9AQ15858 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.02□□□□□ -1.93
SCN9AQ15858 USP9YP20-201ENST00000419224 558 ntBASIC3.02□□□□□ -1.93
SCN9AQ15858 SEC63P1-201ENST00000425785 1258 ntBASIC3.02□□□□□ -1.93
SCN9AQ15858 AC022022.1-201ENST00000430304 178 ntBASIC3.02□□□□□ -1.93
SCN9AQ15858 CACYBPP1-201ENST00000438592 684 ntBASIC3.02□□□□□ -1.93
SCN9AQ15858 ELOCP10-201ENST00000440624 327 ntBASIC3.02□□□□□ -1.93
SCN9AQ15858 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC3.02□□□□□ -1.93
SCN9AQ15858 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC3.02□□□□□ -1.93
SCN9AQ15858 ELOCP34-201ENST00000604436 327 ntBASIC3.02□□□□□ -1.93
SCN9AQ15858 AC103710.3-201ENST00000608157 948 ntBASIC3.02□□□□□ -1.93
SCN9AQ15858 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC3.02□□□□□ -1.93
SCN9AQ15858 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC3.02□□□□□ -1.93
SCN9AQ15858 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
SCN9AQ15858 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.02□□□□□ -1.93
SCN9AQ15858 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
SCN9AQ15858 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC3.02□□□□□ -1.93
SCN9AQ15858 RNU6-225P-201ENST00000384613 103 ntBASIC3.01□□□□□ -1.93
SCN9AQ15858 MIR181B1-201ENST00000385240 110 ntBASIC3.01□□□□□ -1.93
SCN9AQ15858 MIR1289-2-201ENST00000408360 111 ntBASIC3.01□□□□□ -1.93
SCN9AQ15858 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC3.01□□□□□ -1.93
SCN9AQ15858 AC104058.1-201ENST00000448028 297 ntBASIC3.01□□□□□ -1.93
SCN9AQ15858 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC3.01□□□□□ -1.93
SCN9AQ15858 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.01□□□□□ -1.93
SCN9AQ15858 RN7SKP24-201ENST00000515888 284 ntBASIC3.01□□□□□ -1.93
SCN9AQ15858 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
SCN9AQ15858 RGS4-209ENST00000531057 544 ntTSL 4 BASIC3.01□□□□□ -1.93
SCN9AQ15858 ERP27-202ENST00000540097 993 ntTSL 2 BASIC3.01□□□□□ -1.93
SCN9AQ15858 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.01□□□□□ -1.93
SCN9AQ15858 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC3.01□□□□□ -1.93
SCN9AQ15858 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC3.01□□□□□ -1.93
SCN9AQ15858 AP005212.4-201ENST00000614206 710 ntBASIC3.01□□□□□ -1.93
SCN9AQ15858 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC3.01□□□□□ -1.93
SCN9AQ15858 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.01□□□□□ -1.93
SCN9AQ15858 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
SCN9AQ15858 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.01□□□□□ -1.93
SCN9AQ15858 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
SCN9AQ15858 AC069528.2-201ENST00000624849 1991 ntBASIC3.01□□□□□ -1.93
SCN9AQ15858 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
SCN9AQ15858 AL512633.1-201ENST00000399931 655 ntBASIC3.01□□□□□ -1.93
SCN9AQ15858 AL137014.1-201ENST00000420490 1226 ntBASIC3.01□□□□□ -1.93
SCN9AQ15858 MTCO3P17-201ENST00000443775 513 ntBASIC3.01□□□□□ -1.93
SCN9AQ15858 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.01□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms