Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AL117339.2-201ENST00000430475 180 ntBASIC4.54□□□□□ -1.68
COL4A3Q01955 HMGB3P12-201ENST00000438745 556 ntBASIC4.54□□□□□ -1.68
COL4A3Q01955 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC4.54□□□□□ -1.68
COL4A3Q01955 MEMO1P3-201ENST00000459811 302 ntBASIC4.54□□□□□ -1.68
COL4A3Q01955 AC097493.1-201ENST00000463958 372 ntBASIC4.54□□□□□ -1.68
COL4A3Q01955 AC023598.1-201ENST00000472521 361 ntBASIC4.54□□□□□ -1.68
COL4A3Q01955 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC4.54□□□□□ -1.68
COL4A3Q01955 HMGB3P16-201ENST00000508037 287 ntBASIC4.54□□□□□ -1.68
COL4A3Q01955 SNORA48.10-201ENST00000516965 160 ntBASIC4.54□□□□□ -1.68
COL4A3Q01955 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC4.54□□□□□ -1.68
COL4A3Q01955 AC027309.2-201ENST00000520566 192 ntBASIC4.54□□□□□ -1.68
COL4A3Q01955 HIGD1AP6-201ENST00000521833 279 ntBASIC4.54□□□□□ -1.68
COL4A3Q01955 AC013828.2-201ENST00000532487 235 ntBASIC4.54□□□□□ -1.68
COL4A3Q01955 ARL2BPP2-201ENST00000550907 489 ntBASIC4.54□□□□□ -1.68
COL4A3Q01955 AC087477.6-201ENST00000559595 843 ntBASIC4.54□□□□□ -1.68
COL4A3Q01955 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC4.54□□□□□ -1.68
COL4A3Q01955 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC4.54□□□□□ -1.68
COL4A3Q01955 AP001180.3-201ENST00000582221 145 ntBASIC4.54□□□□□ -1.68
COL4A3Q01955 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC4.54□□□□□ -1.68
COL4A3Q01955 NRBF2P1-201ENST00000587407 859 ntBASIC4.54□□□□□ -1.68
COL4A3Q01955 AL442067.2-201ENST00000614033 363 ntBASIC4.54□□□□□ -1.68
COL4A3Q01955 AL445363.3-201ENST00000623080 671 ntBASIC4.54□□□□□ -1.68
COL4A3Q01955 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC4.54□□□□□ -1.68
COL4A3Q01955 AC012442.3-202ENST00000636742 206 ntBASIC4.54□□□□□ -1.68
COL4A3Q01955 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
COL4A3Q01955 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL4A3Q01955 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL4A3Q01955 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL4A3Q01955 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
COL4A3Q01955 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
COL4A3Q01955 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL4A3Q01955 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.53□□□□□ -1.68
COL4A3Q01955 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC4.53□□□□□ -1.68
COL4A3Q01955 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL4A3Q01955 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC4.53□□□□□ -1.68
COL4A3Q01955 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.53□□□□□ -1.68
COL4A3Q01955 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL4A3Q01955 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL4A3Q01955 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL4A3Q01955 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC4.53□□□□□ -1.68
COL4A3Q01955 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL4A3Q01955 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL4A3Q01955 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC4.53□□□□□ -1.68
COL4A3Q01955 U8.3-201ENST00000363321 132 ntBASIC4.53□□□□□ -1.68
COL4A3Q01955 SNORA63-201ENST00000363450 132 ntBASIC4.53□□□□□ -1.68
COL4A3Q01955 Y_RNA.279-201ENST00000364763 95 ntBASIC4.53□□□□□ -1.68
COL4A3Q01955 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL4A3Q01955 MIR506-201ENST00000384998 124 ntBASIC4.53□□□□□ -1.68
COL4A3Q01955 SNRPEP2-201ENST00000397592 279 ntBASIC4.53□□□□□ -1.68
COL4A3Q01955 RNU6-628P-201ENST00000410675 107 ntBASIC4.53□□□□□ -1.68
COL4A3Q01955 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC4.53□□□□□ -1.68
COL4A3Q01955 ISCA1P6-201ENST00000427740 390 ntBASIC4.53□□□□□ -1.68
COL4A3Q01955 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.53□□□□□ -1.68
COL4A3Q01955 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC4.53□□□□□ -1.68
COL4A3Q01955 ATP5HP2-201ENST00000433885 485 ntBASIC4.53□□□□□ -1.68
COL4A3Q01955 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC4.53□□□□□ -1.68
COL4A3Q01955 OR6K1P-201ENST00000456766 971 ntBASIC4.53□□□□□ -1.68
COL4A3Q01955 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC4.53□□□□□ -1.68
COL4A3Q01955 RPS27AP17-201ENST00000463344 455 ntBASIC4.53□□□□□ -1.68
COL4A3Q01955 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC4.53□□□□□ -1.68
COL4A3Q01955 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC4.53□□□□□ -1.68
COL4A3Q01955 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC4.53□□□□□ -1.68
COL4A3Q01955 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL4A3Q01955 MAL2-203ENST00000534619 578 ntTSL 4 BASIC4.53□□□□□ -1.68
COL4A3Q01955 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC4.53□□□□□ -1.68
COL4A3Q01955 MIR544B-201ENST00000582372 78 ntBASIC4.53□□□□□ -1.68
COL4A3Q01955 MIR4637-201ENST00000582405 84 ntBASIC4.53□□□□□ -1.68
COL4A3Q01955 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC4.53□□□□□ -1.68
COL4A3Q01955 BPIFA4P-203ENST00000603168 689 ntBASIC4.53□□□□□ -1.68
COL4A3Q01955 BNIP3P10-201ENST00000605360 577 ntBASIC4.53□□□□□ -1.68
COL4A3Q01955 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL4A3Q01955 DLEU1_2.1-201ENST00000617920 342 ntBASIC4.53□□□□□ -1.68
COL4A3Q01955 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL4A3Q01955 AC091905.1-201ENST00000624400 311 ntBASIC4.53□□□□□ -1.68
COL4A3Q01955 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
COL4A3Q01955 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL4A3Q01955 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC4.53□□□□□ -1.68
COL4A3Q01955 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
COL4A3Q01955 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
COL4A3Q01955 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL4A3Q01955 LINC00561-201ENST00000565815 2738 ntBASIC4.53□□□□□ -1.68
COL4A3Q01955 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.52□□□□□ -1.69
COL4A3Q01955 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC4.52□□□□□ -1.69
COL4A3Q01955 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL4A3Q01955 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.52□□□□□ -1.69
COL4A3Q01955 AC119744.1-201ENST00000454746 1715 ntBASIC4.52□□□□□ -1.69
COL4A3Q01955 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL4A3Q01955 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL4A3Q01955 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
COL4A3Q01955 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL4A3Q01955 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL4A3Q01955 RNU6-251P-201ENST00000363235 104 ntBASIC4.52□□□□□ -1.69
COL4A3Q01955 RNU6-115P-201ENST00000364310 107 ntBASIC4.52□□□□□ -1.69
COL4A3Q01955 RNA5SP130-201ENST00000364431 114 ntBASIC4.52□□□□□ -1.69
COL4A3Q01955 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.52□□□□□ -1.69
COL4A3Q01955 RNU6-317P-201ENST00000384031 107 ntBASIC4.52□□□□□ -1.69
COL4A3Q01955 RNU6-809P-201ENST00000384461 107 ntBASIC4.52□□□□□ -1.69
COL4A3Q01955 U3.23-201ENST00000391132 200 ntBASIC4.52□□□□□ -1.69
COL4A3Q01955 MIR1302-11-201ENST00000408051 138 ntBASIC4.52□□□□□ -1.69
COL4A3Q01955 MIR1302-9-201ENST00000408365 138 ntBASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms