Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 MTND5P27-201ENST00000428871 1720 ntBASIC3.22□□□□□ -1.89
PKNOX1P55347 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC3.21□□□□□ -1.89
PKNOX1P55347 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.21□□□□□ -1.9
PKNOX1P55347 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
PKNOX1P55347 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
PKNOX1P55347 RNU4-35P-201ENST00000362588 141 ntBASIC3.21□□□□□ -1.9
PKNOX1P55347 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
PKNOX1P55347 MIR649-201ENST00000384843 97 ntBASIC3.21□□□□□ -1.9
PKNOX1P55347 GSTA8P-201ENST00000404253 637 ntBASIC3.21□□□□□ -1.9
PKNOX1P55347 AL583834.1-201ENST00000406943 343 ntBASIC3.21□□□□□ -1.9
PKNOX1P55347 AL139098.1-201ENST00000407291 389 ntBASIC3.21□□□□□ -1.9
PKNOX1P55347 RNU6ATAC-201ENST00000408749 126 ntBASIC3.21□□□□□ -1.9
PKNOX1P55347 AC007899.1-201ENST00000412776 775 ntBASIC3.21□□□□□ -1.9
PKNOX1P55347 TOMM22P1-201ENST00000418578 312 ntBASIC3.21□□□□□ -1.9
PKNOX1P55347 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC3.21□□□□□ -1.9
PKNOX1P55347 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.21□□□□□ -1.9
PKNOX1P55347 AC007389.2-201ENST00000434630 306 ntBASIC3.21□□□□□ -1.9
PKNOX1P55347 HMGB1P12-201ENST00000438594 598 ntBASIC3.21□□□□□ -1.9
PKNOX1P55347 ATP5C1P1-201ENST00000441945 895 ntBASIC3.21□□□□□ -1.9
PKNOX1P55347 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC3.21□□□□□ -1.9
PKNOX1P55347 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC3.21□□□□□ -1.9
PKNOX1P55347 HMGN3P1-201ENST00000453847 193 ntBASIC3.21□□□□□ -1.9
PKNOX1P55347 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC3.21□□□□□ -1.9
PKNOX1P55347 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
PKNOX1P55347 HMGB1P38-201ENST00000490557 577 ntBASIC3.21□□□□□ -1.9
PKNOX1P55347 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC3.21□□□□□ -1.9
PKNOX1P55347 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC3.21□□□□□ -1.9
PKNOX1P55347 AC048346.1-201ENST00000510247 144 ntBASIC3.21□□□□□ -1.9
PKNOX1P55347 AP001207.2-201ENST00000519490 539 ntBASIC3.21□□□□□ -1.9
PKNOX1P55347 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.21□□□□□ -1.9
PKNOX1P55347 PTK2-220ENST00000520151 573 ntTSL 4 BASIC3.21□□□□□ -1.9
PKNOX1P55347 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
PKNOX1P55347 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.21□□□□□ -1.9
PKNOX1P55347 MIR3690-201ENST00000580266 75 ntBASIC3.21□□□□□ -1.9
PKNOX1P55347 MIR4697-201ENST00000582977 78 ntBASIC3.21□□□□□ -1.9
PKNOX1P55347 RPAP2P1-201ENST00000603626 1168 ntBASIC3.21□□□□□ -1.9
PKNOX1P55347 AC006023.2-201ENST00000609916 167 ntBASIC3.21□□□□□ -1.9
PKNOX1P55347 MIR6810-201ENST00000622701 70 ntBASIC3.21□□□□□ -1.9
PKNOX1P55347 AC139713.2-210ENST00000641741 992 ntBASIC3.21□□□□□ -1.9
PKNOX1P55347 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
PKNOX1P55347 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
PKNOX1P55347 AL355578.1-201ENST00000607405 1328 ntBASIC3.2□□□□□ -1.9
PKNOX1P55347 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
PKNOX1P55347 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
PKNOX1P55347 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
PKNOX1P55347 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PKNOX1P55347 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PKNOX1P55347 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
PKNOX1P55347 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
PKNOX1P55347 RNA5SP124-201ENST00000362739 110 ntBASIC3.2□□□□□ -1.9
PKNOX1P55347 RNU5B-4P-201ENST00000363508 111 ntBASIC3.2□□□□□ -1.9
PKNOX1P55347 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PKNOX1P55347 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.2□□□□□ -1.9
PKNOX1P55347 SNORD116-23-201ENST00000384645 92 ntBASIC3.2□□□□□ -1.9
PKNOX1P55347 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
PKNOX1P55347 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
PKNOX1P55347 AL121972.1-201ENST00000402023 252 ntBASIC3.2□□□□□ -1.9
PKNOX1P55347 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC3.2□□□□□ -1.9
PKNOX1P55347 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC3.2□□□□□ -1.9
PKNOX1P55347 TRIAP1P1-201ENST00000427062 225 ntBASIC3.2□□□□□ -1.9
PKNOX1P55347 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.2□□□□□ -1.9
PKNOX1P55347 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.2□□□□□ -1.9
PKNOX1P55347 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC3.2□□□□□ -1.9
PKNOX1P55347 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC3.2□□□□□ -1.9
PKNOX1P55347 AC115115.1-201ENST00000449927 248 ntBASIC3.2□□□□□ -1.9
PKNOX1P55347 AC104073.1-201ENST00000451988 151 ntBASIC3.2□□□□□ -1.9
PKNOX1P55347 snoU13.3-201ENST00000459441 104 ntBASIC3.2□□□□□ -1.9
PKNOX1P55347 PLGLA-201ENST00000465668 449 ntBASIC3.2□□□□□ -1.9
PKNOX1P55347 VN1R17P-201ENST00000472048 1090 ntBASIC3.2□□□□□ -1.9
PKNOX1P55347 SYPL1P1-201ENST00000473622 768 ntBASIC3.2□□□□□ -1.9
PKNOX1P55347 AC092185.1-201ENST00000491371 97 ntBASIC3.2□□□□□ -1.9
PKNOX1P55347 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC3.2□□□□□ -1.9
PKNOX1P55347 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PKNOX1P55347 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.2□□□□□ -1.9
PKNOX1P55347 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PKNOX1P55347 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PKNOX1P55347 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.2□□□□□ -1.9
PKNOX1P55347 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.2□□□□□ -1.9
PKNOX1P55347 MTCO3P44-201ENST00000510977 541 ntBASIC3.2□□□□□ -1.9
PKNOX1P55347 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PKNOX1P55347 RNA5SP217-201ENST00000515959 91 ntBASIC3.2□□□□□ -1.9
PKNOX1P55347 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC3.2□□□□□ -1.9
PKNOX1P55347 OR4A45P-201ENST00000529954 901 ntBASIC3.2□□□□□ -1.9
PKNOX1P55347 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.2□□□□□ -1.9
PKNOX1P55347 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC3.2□□□□□ -1.9
PKNOX1P55347 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.2□□□□□ -1.9
PKNOX1P55347 MIR4666A-201ENST00000580160 79 ntBASIC3.2□□□□□ -1.9
PKNOX1P55347 SNORD39.3-201ENST00000584451 71 ntBASIC3.2□□□□□ -1.9
PKNOX1P55347 AC016877.3-201ENST00000606778 504 ntBASIC3.2□□□□□ -1.9
PKNOX1P55347 AL354976.1-201ENST00000613843 387 ntBASIC3.2□□□□□ -1.9
PKNOX1P55347 AC018926.1-201ENST00000616335 435 ntBASIC3.2□□□□□ -1.9
PKNOX1P55347 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC3.2□□□□□ -1.9
PKNOX1P55347 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
PKNOX1P55347 AC244258.1-201ENST00000637553 1071 ntBASIC3.2□□□□□ -1.9
PKNOX1P55347 AC006927.2-201ENST00000639256 389 ntBASIC3.2□□□□□ -1.9
PKNOX1P55347 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.2□□□□□ -1.9
PKNOX1P55347 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC3.2□□□□□ -1.9
PKNOX1P55347 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
PKNOX1P55347 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
PKNOX1P55347 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 78.7 ms