Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC4.4□□□□□ -1.71
HOXC9P31274 GAS5-AS1-201ENST00000602767 694 ntBASIC4.4□□□□□ -1.71
HOXC9P31274 AC021749.1-201ENST00000604322 607 ntBASIC4.4□□□□□ -1.71
HOXC9P31274 AC016877.3-201ENST00000606778 504 ntBASIC4.4□□□□□ -1.71
HOXC9P31274 BMS1P21-201ENST00000634565 365 ntBASIC4.4□□□□□ -1.71
HOXC9P31274 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC4.4□□□□□ -1.71
HOXC9P31274 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC4.39□□□□□ -1.71
HOXC9P31274 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.39□□□□□ -1.71
HOXC9P31274 ZNF807-201ENST00000328088 1707 ntBASIC4.39□□□□□ -1.71
HOXC9P31274 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
HOXC9P31274 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
HOXC9P31274 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
HOXC9P31274 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
HOXC9P31274 RNU6-413P-201ENST00000384115 107 ntBASIC4.39□□□□□ -1.71
HOXC9P31274 TAS2R15P-201ENST00000390674 928 ntBASIC4.39□□□□□ -1.71
HOXC9P31274 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC4.39□□□□□ -1.71
HOXC9P31274 RPL23AP69-201ENST00000431134 458 ntBASIC4.39□□□□□ -1.71
HOXC9P31274 MTND1P26-201ENST00000440488 538 ntBASIC4.39□□□□□ -1.71
HOXC9P31274 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC4.39□□□□□ -1.71
HOXC9P31274 IGKV1OR-3-201ENST00000446944 348 ntBASIC4.39□□□□□ -1.71
HOXC9P31274 RPL23AP15-201ENST00000450202 459 ntBASIC4.39□□□□□ -1.71
HOXC9P31274 AC098826.2-201ENST00000452011 651 ntBASIC4.39□□□□□ -1.71
HOXC9P31274 RN7SL863P-201ENST00000462370 296 ntBASIC4.39□□□□□ -1.71
HOXC9P31274 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
HOXC9P31274 RPS3AP14-201ENST00000483907 780 ntBASIC4.39□□□□□ -1.71
HOXC9P31274 AC011037.1-201ENST00000483964 558 ntBASIC4.39□□□□□ -1.71
HOXC9P31274 AC080014.1-201ENST00000496877 1201 ntBASIC4.39□□□□□ -1.71
HOXC9P31274 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
HOXC9P31274 AC011352.3-201ENST00000505162 593 ntBASIC4.39□□□□□ -1.71
HOXC9P31274 Vault.1-201ENST00000516474 102 ntBASIC4.39□□□□□ -1.71
HOXC9P31274 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC4.39□□□□□ -1.71
HOXC9P31274 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC4.39□□□□□ -1.71
HOXC9P31274 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC4.39□□□□□ -1.71
HOXC9P31274 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC4.39□□□□□ -1.71
HOXC9P31274 AF279873.1-201ENST00000523393 313 ntBASIC4.39□□□□□ -1.71
HOXC9P31274 RGS4-207ENST00000527809 817 ntTSL 4 BASIC4.39□□□□□ -1.71
HOXC9P31274 OR4C2P-201ENST00000530855 1064 ntBASIC4.39□□□□□ -1.71
HOXC9P31274 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC4.39□□□□□ -1.71
HOXC9P31274 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
HOXC9P31274 AC004217.3-201ENST00000551552 878 ntBASIC4.39□□□□□ -1.71
HOXC9P31274 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC4.39□□□□□ -1.71
HOXC9P31274 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC4.39□□□□□ -1.71
HOXC9P31274 AP004247.3-201ENST00000608682 624 ntBASIC4.39□□□□□ -1.71
HOXC9P31274 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC4.39□□□□□ -1.71
HOXC9P31274 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
HOXC9P31274 SCARNA15.3-201ENST00000626315 122 ntBASIC4.39□□□□□ -1.71
HOXC9P31274 SCARNA4.1-201ENST00000628597 123 ntBASIC4.39□□□□□ -1.71
HOXC9P31274 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
HOXC9P31274 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
HOXC9P31274 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC4.39□□□□□ -1.71
HOXC9P31274 MAPK10-373ENST00000641983 6772 ntBASIC4.38□□□□□ -1.71
HOXC9P31274 AP005901.5-201ENST00000545779 1796 ntBASIC4.38□□□□□ -1.71
HOXC9P31274 HMGB1P5-201ENST00000255320 642 ntBASIC4.38□□□□□ -1.71
HOXC9P31274 AL512646.1-201ENST00000269395 1077 ntBASIC4.38□□□□□ -1.71
HOXC9P31274 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC4.38□□□□□ -1.71
HOXC9P31274 AGR3-202ENST00000402239 563 ntTSL 2 BASIC4.38□□□□□ -1.71
HOXC9P31274 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC4.38□□□□□ -1.71
HOXC9P31274 AC007899.1-201ENST00000412776 775 ntBASIC4.38□□□□□ -1.71
HOXC9P31274 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC4.38□□□□□ -1.71
HOXC9P31274 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC4.38□□□□□ -1.71
HOXC9P31274 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC4.38□□□□□ -1.71
HOXC9P31274 AC084290.1-201ENST00000434995 374 ntBASIC4.38□□□□□ -1.71
HOXC9P31274 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC4.38□□□□□ -1.71
HOXC9P31274 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC4.38□□□□□ -1.71
HOXC9P31274 AC008264.1-201ENST00000447612 367 ntBASIC4.38□□□□□ -1.71
HOXC9P31274 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
HOXC9P31274 AC096992.1-201ENST00000459808 709 ntBASIC4.38□□□□□ -1.71
HOXC9P31274 AC068587.2-201ENST00000478386 781 ntBASIC4.38□□□□□ -1.71
HOXC9P31274 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC4.38□□□□□ -1.71
HOXC9P31274 AC008885.2-201ENST00000509506 930 ntBASIC4.38□□□□□ -1.71
HOXC9P31274 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC4.38□□□□□ -1.71
HOXC9P31274 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC4.38□□□□□ -1.71
HOXC9P31274 RN7SKP116-201ENST00000516902 319 ntBASIC4.38□□□□□ -1.71
HOXC9P31274 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC4.38□□□□□ -1.71
HOXC9P31274 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC4.38□□□□□ -1.71
HOXC9P31274 MTND3P12-201ENST00000559068 328 ntBASIC4.38□□□□□ -1.71
HOXC9P31274 MIR4666A-201ENST00000580160 79 ntBASIC4.38□□□□□ -1.71
HOXC9P31274 MIR2682-201ENST00000580305 110 ntBASIC4.38□□□□□ -1.71
HOXC9P31274 NF1P5-201ENST00000588287 448 ntBASIC4.38□□□□□ -1.71
HOXC9P31274 AP001269.3-201ENST00000588718 329 ntBASIC4.38□□□□□ -1.71
HOXC9P31274 AC245036.5-201ENST00000596330 847 ntBASIC4.38□□□□□ -1.71
HOXC9P31274 AC091057.2-201ENST00000602594 792 ntBASIC4.38□□□□□ -1.71
HOXC9P31274 AC007349.4-201ENST00000608114 532 ntBASIC4.38□□□□□ -1.71
HOXC9P31274 AL355493.4-201ENST00000618530 292 ntBASIC4.38□□□□□ -1.71
HOXC9P31274 AC103858.2-201ENST00000621471 543 ntBASIC4.38□□□□□ -1.71
HOXC9P31274 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC4.38□□□□□ -1.71
HOXC9P31274 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC4.38□□□□□ -1.71
HOXC9P31274 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC4.38□□□□□ -1.71
HOXC9P31274 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
HOXC9P31274 AL049737.1-201ENST00000413920 1403 ntBASIC4.38□□□□□ -1.71
HOXC9P31274 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HOXC9P31274 ZNF876P-202ENST00000398732 1485 ntBASIC4.37□□□□□ -1.71
HOXC9P31274 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4.37□□□□□ -1.71
HOXC9P31274 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
HOXC9P31274 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HOXC9P31274 AC118273.1-201ENST00000525324 3006 ntBASIC4.37□□□□□ -1.71
HOXC9P31274 MIR422A-201ENST00000362286 90 ntBASIC4.37□□□□□ -1.71
HOXC9P31274 RNU4-92P-201ENST00000363783 136 ntBASIC4.37□□□□□ -1.71
HOXC9P31274 SNORD116.1-201ENST00000365628 92 ntBASIC4.37□□□□□ -1.71
HOXC9P31274 U3.26-201ENST00000391236 204 ntBASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 98.9 ms