Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
PTPN4P29074 BOLA3P3-201ENST00000505182 232 ntBASIC3.59□□□□□ -1.83
PTPN4P29074 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC3.59□□□□□ -1.83
PTPN4P29074 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
PTPN4P29074 AC022695.1-201ENST00000522089 237 ntBASIC3.59□□□□□ -1.83
PTPN4P29074 AP006245.1-201ENST00000522549 120 ntBASIC3.59□□□□□ -1.83
PTPN4P29074 OR8I1P-201ENST00000529291 931 ntBASIC3.59□□□□□ -1.83
PTPN4P29074 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC3.59□□□□□ -1.83
PTPN4P29074 AC008011.1-201ENST00000545989 227 ntBASIC3.59□□□□□ -1.83
PTPN4P29074 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC3.59□□□□□ -1.83
PTPN4P29074 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC3.59□□□□□ -1.83
PTPN4P29074 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC3.59□□□□□ -1.83
PTPN4P29074 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC3.59□□□□□ -1.83
PTPN4P29074 AC093519.1-201ENST00000566109 298 ntBASIC3.59□□□□□ -1.83
PTPN4P29074 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC3.59□□□□□ -1.83
PTPN4P29074 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.59□□□□□ -1.83
PTPN4P29074 BNIP3P39-201ENST00000601077 554 ntBASIC3.59□□□□□ -1.83
PTPN4P29074 BNIP3P38-201ENST00000601117 544 ntBASIC3.59□□□□□ -1.83
PTPN4P29074 AC006213.4-201ENST00000616184 634 ntBASIC3.59□□□□□ -1.83
PTPN4P29074 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC3.59□□□□□ -1.83
PTPN4P29074 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
PTPN4P29074 U6.98-201ENST00000637157 84 ntBASIC3.59□□□□□ -1.83
PTPN4P29074 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
PTPN4P29074 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
PTPN4P29074 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.59□□□□□ -1.84
PTPN4P29074 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC3.59□□□□□ -1.84
PTPN4P29074 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
PTPN4P29074 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
PTPN4P29074 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.59□□□□□ -1.84
PTPN4P29074 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
PTPN4P29074 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.84
PTPN4P29074 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.59□□□□□ -1.84
PTPN4P29074 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
PTPN4P29074 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
PTPN4P29074 AC007256.1-201ENST00000392253 2765 ntBASIC3.58□□□□□ -1.84
PTPN4P29074 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
PTPN4P29074 AL672296.1-201ENST00000427780 2158 ntBASIC3.58□□□□□ -1.84
PTPN4P29074 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.58□□□□□ -1.84
PTPN4P29074 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
PTPN4P29074 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
PTPN4P29074 RNU6-761P-201ENST00000384148 107 ntBASIC3.58□□□□□ -1.84
PTPN4P29074 SNORD3H-201ENST00000384486 214 ntBASIC3.58□□□□□ -1.84
PTPN4P29074 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
PTPN4P29074 MTHFD2P2-201ENST00000407725 247 ntBASIC3.58□□□□□ -1.84
PTPN4P29074 AC007390.1-201ENST00000415722 356 ntBASIC3.58□□□□□ -1.84
PTPN4P29074 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.58□□□□□ -1.84
PTPN4P29074 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC3.58□□□□□ -1.84
PTPN4P29074 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC3.58□□□□□ -1.84
PTPN4P29074 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
PTPN4P29074 HMGN2P31-201ENST00000432430 273 ntBASIC3.58□□□□□ -1.84
PTPN4P29074 SETP5-201ENST00000437270 562 ntBASIC3.58□□□□□ -1.84
PTPN4P29074 AC241584.1-201ENST00000438469 1241 ntBASIC3.58□□□□□ -1.84
PTPN4P29074 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC3.58□□□□□ -1.84
PTPN4P29074 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.58□□□□□ -1.84
PTPN4P29074 NDUFA5P7-201ENST00000452914 242 ntBASIC3.58□□□□□ -1.84
PTPN4P29074 snoU13.3-201ENST00000459441 104 ntBASIC3.58□□□□□ -1.84
PTPN4P29074 RPL23AP44-201ENST00000482216 473 ntBASIC3.58□□□□□ -1.84
PTPN4P29074 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.58□□□□□ -1.84
PTPN4P29074 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC3.58□□□□□ -1.84
PTPN4P29074 AC021146.5-201ENST00000503544 545 ntBASIC3.58□□□□□ -1.84
PTPN4P29074 AC069306.1-201ENST00000507006 843 ntBASIC3.58□□□□□ -1.84
PTPN4P29074 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC3.58□□□□□ -1.84
PTPN4P29074 TXNP6-201ENST00000510190 310 ntBASIC3.58□□□□□ -1.84
PTPN4P29074 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.58□□□□□ -1.84
PTPN4P29074 AC010374.2-201ENST00000512933 535 ntBASIC3.58□□□□□ -1.84
PTPN4P29074 IGKV2D-36-201ENST00000518643 226 ntBASIC3.58□□□□□ -1.84
PTPN4P29074 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC3.58□□□□□ -1.84
PTPN4P29074 AC010376.1-201ENST00000522101 334 ntBASIC3.58□□□□□ -1.84
PTPN4P29074 AC006518.1-201ENST00000541449 943 ntBASIC3.58□□□□□ -1.84
PTPN4P29074 AL121766.1-201ENST00000547436 487 ntBASIC3.58□□□□□ -1.84
PTPN4P29074 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.58□□□□□ -1.84
PTPN4P29074 GTF2IP22-201ENST00000554443 182 ntBASIC3.58□□□□□ -1.84
PTPN4P29074 MTCYBP27-201ENST00000555160 670 ntBASIC3.58□□□□□ -1.84
PTPN4P29074 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
PTPN4P29074 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC3.58□□□□□ -1.84
PTPN4P29074 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.58□□□□□ -1.84
PTPN4P29074 AC093673.2-201ENST00000609674 331 ntBASIC3.58□□□□□ -1.84
PTPN4P29074 AL391834.2-201ENST00000609982 546 ntBASIC3.58□□□□□ -1.84
PTPN4P29074 AC018816.2-201ENST00000621460 353 ntBASIC3.58□□□□□ -1.84
PTPN4P29074 AC009269.6-201ENST00000621778 588 ntBASIC3.58□□□□□ -1.84
PTPN4P29074 AC006963.1-201ENST00000624003 1052 ntBASIC3.58□□□□□ -1.84
PTPN4P29074 AC004808.1-201ENST00000627671 721 ntBASIC3.58□□□□□ -1.84
PTPN4P29074 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC3.58□□□□□ -1.84
PTPN4P29074 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
PTPN4P29074 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.58□□□□□ -1.84
PTPN4P29074 FER-202ENST00000438717 1531 ntTSL 2 BASIC3.58□□□□□ -1.84
PTPN4P29074 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
PTPN4P29074 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
PTPN4P29074 AC004925.1-201ENST00000624256 2706 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
PTPN4P29074 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
PTPN4P29074 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PTPN4P29074 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PTPN4P29074 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.57□□□□□ -1.84
PTPN4P29074 RNU6-839P-201ENST00000363347 108 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
PTPN4P29074 RNU6-921P-201ENST00000384361 107 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 RNA5SP424-201ENST00000390988 115 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 AC096533.1-201ENST00000411645 353 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 124.1 ms