Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 MIR634-201ENST00000385208 97 ntBASIC3.24□□□□□ -1.89
CLDN9O95484 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
CLDN9O95484 EI24P2-201ENST00000397776 1076 ntBASIC3.24□□□□□ -1.89
CLDN9O95484 RNA5SP107-201ENST00000411358 122 ntBASIC3.24□□□□□ -1.89
CLDN9O95484 AC007390.1-201ENST00000415722 356 ntBASIC3.24□□□□□ -1.89
CLDN9O95484 AIMP1P1-201ENST00000418670 937 ntBASIC3.24□□□□□ -1.89
CLDN9O95484 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.24□□□□□ -1.89
CLDN9O95484 AC012065.2-201ENST00000421295 375 ntBASIC3.24□□□□□ -1.89
CLDN9O95484 HSFY1P1-201ENST00000423928 1178 ntBASIC3.24□□□□□ -1.89
CLDN9O95484 AL590103.1-201ENST00000434488 307 ntBASIC3.24□□□□□ -1.89
CLDN9O95484 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.24□□□□□ -1.89
CLDN9O95484 HMGB1P12-201ENST00000438594 598 ntBASIC3.24□□□□□ -1.89
CLDN9O95484 HMGB3P11-201ENST00000440127 604 ntBASIC3.24□□□□□ -1.89
CLDN9O95484 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC3.24□□□□□ -1.89
CLDN9O95484 AC091564.1-201ENST00000464563 479 ntBASIC3.24□□□□□ -1.89
CLDN9O95484 AC010285.1-201ENST00000470580 392 ntBASIC3.24□□□□□ -1.89
CLDN9O95484 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.24□□□□□ -1.89
CLDN9O95484 HMGB1P22-201ENST00000505315 124 ntBASIC3.24□□□□□ -1.89
CLDN9O95484 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
CLDN9O95484 AC048346.1-201ENST00000510247 144 ntBASIC3.24□□□□□ -1.89
CLDN9O95484 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.24□□□□□ -1.89
CLDN9O95484 OR8I1P-201ENST00000529291 931 ntBASIC3.24□□□□□ -1.89
CLDN9O95484 OR5B10P-201ENST00000532869 642 ntBASIC3.24□□□□□ -1.89
CLDN9O95484 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.24□□□□□ -1.89
CLDN9O95484 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
CLDN9O95484 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.24□□□□□ -1.89
CLDN9O95484 LSM6P2-201ENST00000552208 177 ntBASIC3.24□□□□□ -1.89
CLDN9O95484 AL136520.1-202ENST00000555494 763 ntBASIC3.24□□□□□ -1.89
CLDN9O95484 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.24□□□□□ -1.89
CLDN9O95484 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.24□□□□□ -1.89
CLDN9O95484 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.24□□□□□ -1.89
CLDN9O95484 AL161756.2-201ENST00000604597 246 ntBASIC3.24□□□□□ -1.89
CLDN9O95484 AC006023.2-201ENST00000609916 167 ntBASIC3.24□□□□□ -1.89
CLDN9O95484 AL590282.1-201ENST00000610379 1136 ntBASIC3.24□□□□□ -1.89
CLDN9O95484 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
CLDN9O95484 AC078880.5-201ENST00000617845 421 ntBASIC3.24□□□□□ -1.89
CLDN9O95484 SNORD39.4-201ENST00000620099 78 ntBASIC3.24□□□□□ -1.89
CLDN9O95484 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC3.24□□□□□ -1.89
CLDN9O95484 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC3.24□□□□□ -1.89
CLDN9O95484 AC127502.3-201ENST00000636170 1206 ntBASIC3.24□□□□□ -1.89
CLDN9O95484 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CLDN9O95484 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.23□□□□□ -1.89
CLDN9O95484 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.23□□□□□ -1.89
CLDN9O95484 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.23□□□□□ -1.89
CLDN9O95484 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.23□□□□□ -1.89
CLDN9O95484 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CLDN9O95484 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC3.23□□□□□ -1.89
CLDN9O95484 AL121978.1-201ENST00000402778 359 ntBASIC3.23□□□□□ -1.89
CLDN9O95484 RNU2-71P-201ENST00000411395 189 ntBASIC3.23□□□□□ -1.89
CLDN9O95484 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.23□□□□□ -1.89
CLDN9O95484 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CLDN9O95484 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC3.23□□□□□ -1.89
CLDN9O95484 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC3.23□□□□□ -1.89
CLDN9O95484 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.23□□□□□ -1.89
CLDN9O95484 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
CLDN9O95484 ISCA1P2-201ENST00000438679 421 ntBASIC3.23□□□□□ -1.89
CLDN9O95484 MTCYBP31-201ENST00000438855 1122 ntBASIC3.23□□□□□ -1.89
CLDN9O95484 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.23□□□□□ -1.89
CLDN9O95484 RPS3AP12-201ENST00000443616 753 ntBASIC3.23□□□□□ -1.89
CLDN9O95484 AL096829.2-201ENST00000446582 742 ntBASIC3.23□□□□□ -1.89
CLDN9O95484 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC3.23□□□□□ -1.89
CLDN9O95484 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.23□□□□□ -1.89
CLDN9O95484 HMGN2P16-201ENST00000456802 261 ntBASIC3.23□□□□□ -1.89
CLDN9O95484 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.23□□□□□ -1.89
CLDN9O95484 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CLDN9O95484 AC118282.2-201ENST00000508739 374 ntBASIC3.23□□□□□ -1.89
CLDN9O95484 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC3.23□□□□□ -1.89
CLDN9O95484 APOOP4-201ENST00000513530 597 ntBASIC3.23□□□□□ -1.89
CLDN9O95484 SNORA31.20-201ENST00000517111 133 ntBASIC3.23□□□□□ -1.89
CLDN9O95484 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.23□□□□□ -1.89
CLDN9O95484 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.23□□□□□ -1.89
CLDN9O95484 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.23□□□□□ -1.89
CLDN9O95484 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC3.23□□□□□ -1.89
CLDN9O95484 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CLDN9O95484 AC006518.2-201ENST00000542513 940 ntBASIC3.23□□□□□ -1.89
CLDN9O95484 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.23□□□□□ -1.89
CLDN9O95484 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC3.23□□□□□ -1.89
CLDN9O95484 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CLDN9O95484 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.23□□□□□ -1.89
CLDN9O95484 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.23□□□□□ -1.89
CLDN9O95484 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC3.23□□□□□ -1.89
CLDN9O95484 SNORD39.3-201ENST00000584451 71 ntBASIC3.23□□□□□ -1.89
CLDN9O95484 AC008507.1-201ENST00000587506 734 ntBASIC3.23□□□□□ -1.89
CLDN9O95484 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.23□□□□□ -1.89
CLDN9O95484 AC011492.1-201ENST00000600023 315 ntBASIC3.23□□□□□ -1.89
CLDN9O95484 AC090425.2-201ENST00000608818 501 ntBASIC3.23□□□□□ -1.89
CLDN9O95484 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
CLDN9O95484 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC3.23□□□□□ -1.89
CLDN9O95484 uc_338.1-201ENST00000612113 180 ntBASIC3.23□□□□□ -1.89
CLDN9O95484 MIR8058-201ENST00000615737 89 ntBASIC3.23□□□□□ -1.89
CLDN9O95484 XIST_intron.1-201ENST00000619444 68 ntBASIC3.23□□□□□ -1.89
CLDN9O95484 AC006963.1-201ENST00000624003 1052 ntBASIC3.23□□□□□ -1.89
CLDN9O95484 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC3.23□□□□□ -1.89
CLDN9O95484 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
CLDN9O95484 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.23□□□□□ -1.89
CLDN9O95484 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CLDN9O95484 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CLDN9O95484 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CLDN9O95484 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CLDN9O95484 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms