Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 AC091153.1-201ENST00000466297 402 ntBASIC3.64□□□□□ -1.83
CLDN3O15551 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC3.64□□□□□ -1.83
CLDN3O15551 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.64□□□□□ -1.83
CLDN3O15551 RNU6-1231P-201ENST00000517185 103 ntBASIC3.64□□□□□ -1.83
CLDN3O15551 AC006518.2-201ENST00000542513 940 ntBASIC3.64□□□□□ -1.83
CLDN3O15551 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.64□□□□□ -1.83
CLDN3O15551 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.64□□□□□ -1.83
CLDN3O15551 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.64□□□□□ -1.83
CLDN3O15551 MIR5047-201ENST00000579212 100 ntBASIC3.64□□□□□ -1.83
CLDN3O15551 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC3.64□□□□□ -1.83
CLDN3O15551 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.64□□□□□ -1.83
CLDN3O15551 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC3.64□□□□□ -1.83
CLDN3O15551 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.64□□□□□ -1.83
CLDN3O15551 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC3.64□□□□□ -1.83
CLDN3O15551 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC3.64□□□□□ -1.83
CLDN3O15551 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.64□□□□□ -1.83
CLDN3O15551 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.64□□□□□ -1.83
CLDN3O15551 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
CLDN3O15551 AC138915.3-201ENST00000562908 1389 ntBASIC3.63□□□□□ -1.83
CLDN3O15551 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
CLDN3O15551 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
CLDN3O15551 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
CLDN3O15551 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
CLDN3O15551 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
CLDN3O15551 MIR208A-201ENST00000362287 71 ntBASIC3.63□□□□□ -1.83
CLDN3O15551 TAF9BP1-201ENST00000396646 746 ntBASIC3.63□□□□□ -1.83
CLDN3O15551 AL121978.1-201ENST00000402778 359 ntBASIC3.63□□□□□ -1.83
CLDN3O15551 RNU2-71P-201ENST00000411395 189 ntBASIC3.63□□□□□ -1.83
CLDN3O15551 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.63□□□□□ -1.83
CLDN3O15551 AL035410.1-201ENST00000427409 427 ntBASIC3.63□□□□□ -1.83
CLDN3O15551 AC005300.1-201ENST00000428401 373 ntBASIC3.63□□□□□ -1.83
CLDN3O15551 FO393414.1-201ENST00000428697 1184 ntBASIC3.63□□□□□ -1.83
CLDN3O15551 AC005326.1-201ENST00000429197 123 ntBASIC3.63□□□□□ -1.83
CLDN3O15551 USP9YP31-201ENST00000431405 881 ntBASIC3.63□□□□□ -1.83
CLDN3O15551 SETP5-201ENST00000437270 562 ntBASIC3.63□□□□□ -1.83
CLDN3O15551 HMGB1P12-201ENST00000438594 598 ntBASIC3.63□□□□□ -1.83
CLDN3O15551 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.63□□□□□ -1.83
CLDN3O15551 AC104073.1-201ENST00000451988 151 ntBASIC3.63□□□□□ -1.83
CLDN3O15551 RPL7P38-201ENST00000488396 739 ntBASIC3.63□□□□□ -1.83
CLDN3O15551 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC3.63□□□□□ -1.83
CLDN3O15551 AC021678.1-201ENST00000505195 936 ntBASIC3.63□□□□□ -1.83
CLDN3O15551 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
CLDN3O15551 AC118282.2-201ENST00000508739 374 ntBASIC3.63□□□□□ -1.83
CLDN3O15551 AC048346.1-201ENST00000510247 144 ntBASIC3.63□□□□□ -1.83
CLDN3O15551 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.63□□□□□ -1.83
CLDN3O15551 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.63□□□□□ -1.83
CLDN3O15551 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC3.63□□□□□ -1.83
CLDN3O15551 UBE2NP1-201ENST00000545592 458 ntBASIC3.63□□□□□ -1.83
CLDN3O15551 AC005476.1-201ENST00000554427 397 ntBASIC3.63□□□□□ -1.83
CLDN3O15551 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.63□□□□□ -1.83
CLDN3O15551 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.63□□□□□ -1.83
CLDN3O15551 AL162713.1-201ENST00000604480 262 ntBASIC3.63□□□□□ -1.83
CLDN3O15551 AC002487.1-201ENST00000604565 994 ntBASIC3.63□□□□□ -1.83
CLDN3O15551 DPRXP5-201ENST00000604662 539 ntBASIC3.63□□□□□ -1.83
CLDN3O15551 AC007179.3-201ENST00000604976 235 ntBASIC3.63□□□□□ -1.83
CLDN3O15551 AC006023.2-201ENST00000609916 167 ntBASIC3.63□□□□□ -1.83
CLDN3O15551 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
CLDN3O15551 VN1R74P-201ENST00000613259 503 ntBASIC3.63□□□□□ -1.83
CLDN3O15551 MIR8058-201ENST00000615737 89 ntBASIC3.63□□□□□ -1.83
CLDN3O15551 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC3.63□□□□□ -1.83
CLDN3O15551 BX649567.1-201ENST00000642071 1134 ntBASIC3.63□□□□□ -1.83
CLDN3O15551 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
CLDN3O15551 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.63□□□□□ -1.83
CLDN3O15551 AC058791.1-201ENST00000608412 3198 ntBASIC3.63□□□□□ -1.83
CLDN3O15551 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
CLDN3O15551 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
CLDN3O15551 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.62□□□□□ -1.83
CLDN3O15551 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC3.62□□□□□ -1.83
CLDN3O15551 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.62□□□□□ -1.83
CLDN3O15551 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
CLDN3O15551 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC3.62□□□□□ -1.83
CLDN3O15551 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
CLDN3O15551 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.62□□□□□ -1.83
CLDN3O15551 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC3.62□□□□□ -1.83
CLDN3O15551 RNU6-619P-201ENST00000365146 108 ntBASIC3.62□□□□□ -1.83
CLDN3O15551 RNU6-761P-201ENST00000384148 107 ntBASIC3.62□□□□□ -1.83
CLDN3O15551 U3.19-201ENST00000390893 196 ntBASIC3.62□□□□□ -1.83
CLDN3O15551 RPL22P22-201ENST00000395439 379 ntBASIC3.62□□□□□ -1.83
CLDN3O15551 RNA5SP120-201ENST00000410900 112 ntBASIC3.62□□□□□ -1.83
CLDN3O15551 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.62□□□□□ -1.83
CLDN3O15551 RPS6P14-201ENST00000425165 719 ntBASIC3.62□□□□□ -1.83
CLDN3O15551 BX679664.1-201ENST00000434429 253 ntBASIC3.62□□□□□ -1.83
CLDN3O15551 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC3.62□□□□□ -1.83
CLDN3O15551 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC3.62□□□□□ -1.83
CLDN3O15551 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.62□□□□□ -1.83
CLDN3O15551 RPL21P104-201ENST00000464143 478 ntBASIC3.62□□□□□ -1.83
CLDN3O15551 AC010285.1-201ENST00000470580 392 ntBASIC3.62□□□□□ -1.83
CLDN3O15551 AL136126.1-201ENST00000473603 402 ntBASIC3.62□□□□□ -1.83
CLDN3O15551 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC3.62□□□□□ -1.83
CLDN3O15551 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC3.62□□□□□ -1.83
CLDN3O15551 HIGD1AP10-201ENST00000527837 282 ntBASIC3.62□□□□□ -1.83
CLDN3O15551 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.62□□□□□ -1.83
CLDN3O15551 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC3.62□□□□□ -1.83
CLDN3O15551 SYF2P1-201ENST00000550658 413 ntBASIC3.62□□□□□ -1.83
CLDN3O15551 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.62□□□□□ -1.83
CLDN3O15551 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.62□□□□□ -1.83
CLDN3O15551 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC3.62□□□□□ -1.83
CLDN3O15551 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC3.62□□□□□ -1.83
CLDN3O15551 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.62□□□□□ -1.83
CLDN3O15551 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 134.8 ms