Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AC093311.1-201ENST00000506586 2021 ntBASIC4.11□□□□□ -1.75
CCDC88BA6NC98 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC4.11□□□□□ -1.75
CCDC88BA6NC98 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC88BA6NC98 XPOTP1-201ENST00000443317 2398 ntBASIC4.11□□□□□ -1.75
CCDC88BA6NC98 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC4.11□□□□□ -1.75
CCDC88BA6NC98 RNU6-76P-201ENST00000384060 104 ntBASIC4.11□□□□□ -1.75
CCDC88BA6NC98 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
CCDC88BA6NC98 ATG3P1-201ENST00000419507 911 ntBASIC4.11□□□□□ -1.75
CCDC88BA6NC98 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC4.11□□□□□ -1.75
CCDC88BA6NC98 AC104389.3-201ENST00000445629 235 ntBASIC4.11□□□□□ -1.75
CCDC88BA6NC98 AC026464.5-201ENST00000562497 722 ntBASIC4.11□□□□□ -1.75
CCDC88BA6NC98 AC004696.1-201ENST00000614345 607 ntBASIC4.11□□□□□ -1.75
CCDC88BA6NC98 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC4.11□□□□□ -1.75
CCDC88BA6NC98 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC88BA6NC98 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC88BA6NC98 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC88BA6NC98 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC4.1□□□□□ -1.75
CCDC88BA6NC98 SNORA68.2-201ENST00000391263 128 ntBASIC4.1□□□□□ -1.75
CCDC88BA6NC98 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC88BA6NC98 AL591416.1-201ENST00000404015 867 ntBASIC4.1□□□□□ -1.75
CCDC88BA6NC98 AC244505.4-201ENST00000434905 287 ntBASIC4.1□□□□□ -1.75
CCDC88BA6NC98 SSXP5-201ENST00000443473 287 ntBASIC4.1□□□□□ -1.75
CCDC88BA6NC98 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC4.1□□□□□ -1.75
CCDC88BA6NC98 RPL21P18-201ENST00000469899 480 ntBASIC4.1□□□□□ -1.75
CCDC88BA6NC98 RPL9P33-201ENST00000484311 566 ntBASIC4.1□□□□□ -1.75
CCDC88BA6NC98 AL024509.2-201ENST00000493462 493 ntBASIC4.1□□□□□ -1.75
CCDC88BA6NC98 AC015712.3-201ENST00000559380 164 ntBASIC4.1□□□□□ -1.75
CCDC88BA6NC98 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC4.1□□□□□ -1.75
CCDC88BA6NC98 AL136981.2-201ENST00000617319 734 ntBASIC4.1□□□□□ -1.75
CCDC88BA6NC98 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC4.1□□□□□ -1.75
CCDC88BA6NC98 AP001005.3-201ENST00000622049 129 ntBASIC4.1□□□□□ -1.75
CCDC88BA6NC98 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
CCDC88BA6NC98 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
CCDC88BA6NC98 ZNF542P-204ENST00000482727 1305 ntBASIC4.09□□□□□ -1.75
CCDC88BA6NC98 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC4.09□□□□□ -1.75
CCDC88BA6NC98 AL513175.2-201ENST00000422071 443 ntBASIC4.09□□□□□ -1.75
CCDC88BA6NC98 MTCO2P17-201ENST00000424336 677 ntBASIC4.09□□□□□ -1.75
CCDC88BA6NC98 COX6CP2-201ENST00000444980 225 ntBASIC4.09□□□□□ -1.75
CCDC88BA6NC98 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC4.09□□□□□ -1.75
CCDC88BA6NC98 TMEM161BP1-201ENST00000457388 1457 ntBASIC4.09□□□□□ -1.76
CCDC88BA6NC98 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
CCDC88BA6NC98 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
CCDC88BA6NC98 RPL36AP33-201ENST00000450395 310 ntBASIC4.08□□□□□ -1.76
CCDC88BA6NC98 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC4.08□□□□□ -1.76
CCDC88BA6NC98 RPS20P22-201ENST00000473700 357 ntBASIC4.08□□□□□ -1.76
CCDC88BA6NC98 LINC00888-204ENST00000487386 421 ntBASIC4.08□□□□□ -1.76
CCDC88BA6NC98 RN7SL283P-201ENST00000489055 303 ntBASIC4.08□□□□□ -1.76
CCDC88BA6NC98 AC112673.1-201ENST00000513168 575 ntBASIC4.08□□□□□ -1.76
CCDC88BA6NC98 ZDHHC20P3-201ENST00000531576 336 ntBASIC4.08□□□□□ -1.76
CCDC88BA6NC98 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC4.08□□□□□ -1.76
CCDC88BA6NC98 OR10AB1P-202ENST00000641219 1686 ntBASIC4.08□□□□□ -1.76
CCDC88BA6NC98 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
CCDC88BA6NC98 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
CCDC88BA6NC98 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC4.08□□□□□ -1.76
CCDC88BA6NC98 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC4.07□□□□□ -1.76
CCDC88BA6NC98 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC88BA6NC98 5S_rRNA.2-201ENST00000391293 112 ntBASIC4.07□□□□□ -1.76
CCDC88BA6NC98 RNU2-22P-201ENST00000411266 212 ntBASIC4.07□□□□□ -1.76
CCDC88BA6NC98 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC88BA6NC98 RPL21P71-201ENST00000465598 459 ntBASIC4.07□□□□□ -1.76
CCDC88BA6NC98 AP000893.1-201ENST00000474462 794 ntBASIC4.07□□□□□ -1.76
CCDC88BA6NC98 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
CCDC88BA6NC98 AC108210.2-201ENST00000503681 201 ntBASIC4.07□□□□□ -1.76
CCDC88BA6NC98 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC88BA6NC98 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC4.07□□□□□ -1.76
CCDC88BA6NC98 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC88BA6NC98 AC026634.1-201ENST00000634369 198 ntBASIC4.07□□□□□ -1.76
CCDC88BA6NC98 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC4.07□□□□□ -1.76
CCDC88BA6NC98 AC104454.1-201ENST00000421341 1401 ntBASIC4.07□□□□□ -1.76
CCDC88BA6NC98 FAM133CP-201ENST00000332869 704 ntBASIC4.06□□□□□ -1.76
CCDC88BA6NC98 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
CCDC88BA6NC98 SNORA64-201ENST00000384674 134 ntBASIC4.06□□□□□ -1.76
CCDC88BA6NC98 MTCO3P31-201ENST00000405526 789 ntBASIC4.06□□□□□ -1.76
CCDC88BA6NC98 Z98742.2-201ENST00000431564 187 ntBASIC4.06□□□□□ -1.76
CCDC88BA6NC98 RPL21P99-201ENST00000480369 423 ntBASIC4.06□□□□□ -1.76
CCDC88BA6NC98 AL389895.1-201ENST00000554127 252 ntBASIC4.06□□□□□ -1.76
CCDC88BA6NC98 AL358913.1-201ENST00000554342 121 ntBASIC4.06□□□□□ -1.76
CCDC88BA6NC98 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC4.06□□□□□ -1.76
CCDC88BA6NC98 AC009487.2-201ENST00000420969 6821 ntBASIC4.06□□□□□ -1.76
CCDC88BA6NC98 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
CCDC88BA6NC98 SRIP2-201ENST00000428470 166 ntBASIC4.05□□□□□ -1.76
CCDC88BA6NC98 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC4.05□□□□□ -1.76
CCDC88BA6NC98 MTND6P18-201ENST00000439477 513 ntBASIC4.05□□□□□ -1.76
CCDC88BA6NC98 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC4.05□□□□□ -1.76
CCDC88BA6NC98 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC4.05□□□□□ -1.76
CCDC88BA6NC98 SNRPGP18-201ENST00000553000 214 ntBASIC4.05□□□□□ -1.76
CCDC88BA6NC98 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC4.05□□□□□ -1.76
CCDC88BA6NC98 AC009318.2-201ENST00000610917 651 ntBASIC4.05□□□□□ -1.76
CCDC88BA6NC98 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC4.05□□□□□ -1.76
CCDC88BA6NC98 ATP8A2P3-201ENST00000426792 1536 ntBASIC4.05□□□□□ -1.76
CCDC88BA6NC98 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC4.05□□□□□ -1.76
CCDC88BA6NC98 RNU6-304P-201ENST00000364855 107 ntBASIC4.05□□□□□ -1.76
CCDC88BA6NC98 SNORA41-201ENST00000384675 132 ntBASIC4.05□□□□□ -1.76
CCDC88BA6NC98 AC013410.1-201ENST00000436223 1232 ntBASIC4.05□□□□□ -1.76
CCDC88BA6NC98 CACYBPP1-201ENST00000438592 684 ntBASIC4.05□□□□□ -1.76
CCDC88BA6NC98 RANP3-201ENST00000530970 276 ntBASIC4.05□□□□□ -1.76
CCDC88BA6NC98 AC069234.5-201ENST00000611056 416 ntBASIC4.05□□□□□ -1.76
CCDC88BA6NC98 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC88BA6NC98 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC88BA6NC98 ANKRD20A9P-201ENST00000457997 2978 ntBASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 139.3 ms