Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 ADAMTS7P4-205ENST00000560651 453 ntTSL 3 BASIC6.59□□□□□ -1.35
VPS9D1Q9Y2B5 AC067852.5-201ENST00000589299 310 ntBASIC6.59□□□□□ -1.35
VPS9D1Q9Y2B5 AC010325.2-201ENST00000594114 260 ntTSL 3 BASIC6.59□□□□□ -1.35
VPS9D1Q9Y2B5 Y_RNA.771-201ENST00000598668 102 ntBASIC6.59□□□□□ -1.35
VPS9D1Q9Y2B5 RPS11-205ENST00000599561 430 ntTSL 5 BASIC6.59□□□□□ -1.35
VPS9D1Q9Y2B5 AL008718.3-201ENST00000610217 321 ntBASIC6.59□□□□□ -1.35
VPS9D1Q9Y2B5 AC240442.1-201ENST00000616055 283 ntBASIC6.59□□□□□ -1.35
VPS9D1Q9Y2B5 Y_RNA.789-201ENST00000622480 102 ntBASIC6.59□□□□□ -1.35
VPS9D1Q9Y2B5 AC007998.5-201ENST00000622938 237 ntBASIC6.59□□□□□ -1.35
VPS9D1Q9Y2B5 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
VPS9D1Q9Y2B5 SELE-203ENST00000367775 3389 ntTSL 5 BASIC6.59□□□□□ -1.35
VPS9D1Q9Y2B5 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC6.59□□□□□ -1.35
VPS9D1Q9Y2B5 GYPA-214ENST00000641688 1764 ntAPPRIS ALT2 BASIC6.59□□□□□ -1.35
VPS9D1Q9Y2B5 RAB9B-201ENST00000243298 3748 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
VPS9D1Q9Y2B5 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
VPS9D1Q9Y2B5 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.36
VPS9D1Q9Y2B5 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
VPS9D1Q9Y2B5 LINC01876-209ENST00000638047 1983 ntTSL 5 BASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 AC093849.1-201ENST00000563631 2209 ntBASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 NUMB-229ENST00000557597 3547 ntAPPRIS P3 TSL 1 (best) BASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 AL731556.1-201ENST00000394628 3711 ntBASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 AC005332.9-201ENST00000620266 2921 ntBASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 AC107021.2-201ENST00000567714 2095 ntBASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 DAPL1-201ENST00000309950 552 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 COX6B1P3-201ENST00000312310 260 ntBASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 OR6P1-201ENST00000334632 954 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 VTRNA3-1P-201ENST00000362552 102 ntBASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 Y_RNA.275-201ENST00000364726 110 ntBASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 Y_RNA.308-201ENST00000365043 101 ntBASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 SNORD116-14-201ENST00000383894 92 ntBASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 SNORD116-17-201ENST00000383929 92 ntBASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 SNORD116-15-201ENST00000384445 92 ntBASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 SNORD116-20-201ENST00000384529 92 ntBASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 SNORD116-19-201ENST00000384729 92 ntBASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 AL109941.1-201ENST00000401925 229 ntBASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 OR2A2-201ENST00000408979 1051 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 DAPL1-203ENST00000409042 544 ntTSL 4 BASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 CYCSP52-201ENST00000422857 310 ntBASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 AL451136.1-201ENST00000435399 325 ntBASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 GAPDHP37-201ENST00000442317 968 ntBASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 AC114752.1-201ENST00000448204 289 ntTSL 3 BASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 AC133134.1-201ENST00000466800 359 ntBASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 AC010287.1-201ENST00000566916 357 ntBASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 HOXA11-AS1_3.1-201ENST00000613383 98 ntBASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 AL352984.2-202ENST00000613699 155 ntBASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 AC084757.4-201ENST00000616350 526 ntBASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 SNHG22-203ENST00000617833 660 ntBASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 GRXCR2-201ENST00000377976 2002 ntAPPRIS P1 TSL 2 BASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 AL591848.4-201ENST00000567832 3472 ntBASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 AL357568.1-201ENST00000421530 1963 ntTSL 2 BASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 FBXW10-203ENST00000395665 3431 ntAPPRIS P3 TSL 1 (best) BASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 KIAA0895-201ENST00000297063 4153 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
VPS9D1Q9Y2B5 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 Y_RNA.71-201ENST00000362892 104 ntBASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 MIR186-201ENST00000384988 86 ntBASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 SNORA40-201ENST00000388090 126 ntBASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 AL358176.3-201ENST00000420757 454 ntBASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 TOMM20P4-201ENST00000427861 435 ntBASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 LRTOMT-209ENST00000440313 253 ntTSL 3 BASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 SLAMF6P1-201ENST00000451067 602 ntBASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 RPL23AP65-201ENST00000475608 468 ntBASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 WDFY3-AS1-201ENST00000510449 493 ntTSL 3 BASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 RNA5SP272-201ENST00000516095 111 ntBASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 SNORD116-25-201ENST00000516517 92 ntBASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 IGHV1-14-201ENST00000523391 241 ntBASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 TPPP2-208ENST00000530140 703 ntAPPRIS P1 TSL 2 BASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 TRAV32-201ENST00000553993 340 ntBASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 AC019131.1-201ENST00000583654 622 ntTSL 5 BASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 AC174048.1-201ENST00000603389 144 ntBASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 AC091193.1-201ENST00000604640 448 ntBASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 AC006077.1-201ENST00000604746 343 ntBASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 U1.31-201ENST00000620022 160 ntBASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 IGHVIII-44-202ENST00000636235 289 ntBASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 NOSTRIN-209ENST00000458381 2535 ntTSL 2 BASIC6.57□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms