Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AL133457.1-201ENST00000564251 987 ntBASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 MAGOH2P-202ENST00000584384 429 ntBASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 BNIP3P23-201ENST00000599655 511 ntBASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 AC119501.1-201ENST00000603646 475 ntBASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 AC018755.4-201ENST00000619715 454 ntBASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 MIR6730-201ENST00000622213 67 ntBASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 GDI2P1-201ENST00000429312 1336 ntBASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 AC130650.2-201ENST00000618736 2403 ntBASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 Y_RNA.359-201ENST00000365498 102 ntBASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 AC019155.1-201ENST00000382242 574 ntBASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 MTCYBP36-201ENST00000404146 440 ntBASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 RNU2-21P-201ENST00000410368 188 ntBASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 AF274854.1-201ENST00000413236 615 ntBASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 TPMTP2-201ENST00000414372 726 ntBASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 MTCO1P21-201ENST00000416634 589 ntBASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 OR5BE1P-201ENST00000425977 939 ntBASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 AC017015.1-201ENST00000477387 286 ntBASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 AC231760.1-201ENST00000498002 260 ntBASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 AC010625.1-201ENST00000511296 403 ntBASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 AC024589.1-201ENST00000512207 263 ntBASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 FABP5P5-201ENST00000515537 406 ntBASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 RNA5SP49-201ENST00000516450 115 ntBASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 AC022790.1-201ENST00000522872 204 ntBASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 EIF1P4-201ENST00000572664 335 ntBASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 RPL23AP92-201ENST00000603609 255 ntBASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 AC004492.1-201ENST00000607036 742 ntBASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 AC097468.3-201ENST00000607956 456 ntBASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 FAM27D1-201ENST00000612308 341 ntBASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 AC025588.4-201ENST00000615802 908 ntBASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 MESTIT1_2.1-201ENST00000616328 235 ntBASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 LINC00901.1-201ENST00000617252 152 ntBASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 AL357080.1-201ENST00000617394 239 ntBASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 OR5BE1P-202ENST00000641168 1176 ntBASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
LIMCH1Q9UPQ0 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 AC090971.4-201ENST00000560291 1800 ntBASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 RNU6-398P-201ENST00000384143 109 ntBASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 AC016769.3-201ENST00000396562 315 ntBASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 RNA5SP306-201ENST00000411087 107 ntBASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 COX6CP17-201ENST00000421389 185 ntBASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 RPS29P17-201ENST00000430795 166 ntBASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 RPS20P1-201ENST00000434853 354 ntBASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 USP9YP34-201ENST00000453983 808 ntBASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 RPS20P21-201ENST00000466859 343 ntBASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 AC108941.1-201ENST00000502853 530 ntBASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 RNA5SP519-201ENST00000516480 119 ntBASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 DERA-209ENST00000532964 854 ntTSL 5 BASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 MIR4715-201ENST00000584117 79 ntBASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 NDUFA8P1-201ENST00000605525 367 ntBASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 AC090186.1-201ENST00000605991 572 ntBASIC4.93□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 116.7 ms