Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.71□□□□□ -1.66
TDP1Q9NUW8 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC4.71□□□□□ -1.66
TDP1Q9NUW8 OR4G2P-201ENST00000328113 903 ntBASIC4.71□□□□□ -1.66
TDP1Q9NUW8 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC4.71□□□□□ -1.66
TDP1Q9NUW8 RNU6-878P-201ENST00000384578 110 ntBASIC4.71□□□□□ -1.66
TDP1Q9NUW8 RPS3AP36-201ENST00000398190 775 ntBASIC4.71□□□□□ -1.66
TDP1Q9NUW8 RPS20P2-201ENST00000402520 389 ntBASIC4.71□□□□□ -1.66
TDP1Q9NUW8 AL078595.1-201ENST00000404458 226 ntBASIC4.71□□□□□ -1.66
TDP1Q9NUW8 CTSL3P-202ENST00000412179 788 ntBASIC4.71□□□□□ -1.66
TDP1Q9NUW8 RPL31P2-201ENST00000413849 377 ntBASIC4.71□□□□□ -1.66
TDP1Q9NUW8 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
TDP1Q9NUW8 RPL36AP36-201ENST00000418616 301 ntBASIC4.71□□□□□ -1.66
TDP1Q9NUW8 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC4.71□□□□□ -1.66
TDP1Q9NUW8 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.71□□□□□ -1.66
TDP1Q9NUW8 AC004975.1-201ENST00000428733 208 ntBASIC4.71□□□□□ -1.66
TDP1Q9NUW8 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.71□□□□□ -1.66
TDP1Q9NUW8 AL356276.2-201ENST00000435919 558 ntBASIC4.71□□□□□ -1.66
TDP1Q9NUW8 FAM103A2P-201ENST00000444122 354 ntBASIC4.71□□□□□ -1.66
TDP1Q9NUW8 GAPDHP17-201ENST00000449858 1001 ntBASIC4.71□□□□□ -1.66
TDP1Q9NUW8 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC4.71□□□□□ -1.66
TDP1Q9NUW8 RGS5-217ENST00000451759 835 ntTSL 3 BASIC4.71□□□□□ -1.66
TDP1Q9NUW8 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC4.71□□□□□ -1.66
TDP1Q9NUW8 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC4.71□□□□□ -1.66
TDP1Q9NUW8 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC4.71□□□□□ -1.66
TDP1Q9NUW8 AC022034.3-201ENST00000471393 478 ntBASIC4.71□□□□□ -1.66
TDP1Q9NUW8 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC4.71□□□□□ -1.66
TDP1Q9NUW8 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC4.71□□□□□ -1.66
TDP1Q9NUW8 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC4.71□□□□□ -1.66
TDP1Q9NUW8 RN7SKP82-201ENST00000516786 223 ntBASIC4.71□□□□□ -1.66
TDP1Q9NUW8 DEFB108A-201ENST00000530110 222 ntBASIC4.71□□□□□ -1.66
TDP1Q9NUW8 AP003122.4-201ENST00000530980 758 ntBASIC4.71□□□□□ -1.66
TDP1Q9NUW8 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
TDP1Q9NUW8 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.71□□□□□ -1.66
TDP1Q9NUW8 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC4.71□□□□□ -1.66
TDP1Q9NUW8 MIR3138-201ENST00000585238 82 ntBASIC4.71□□□□□ -1.66
TDP1Q9NUW8 AL513477.2-201ENST00000607858 568 ntBASIC4.71□□□□□ -1.66
TDP1Q9NUW8 AC114781.5-201ENST00000615297 108 ntBASIC4.71□□□□□ -1.66
TDP1Q9NUW8 AC068831.8-201ENST00000620171 435 ntBASIC4.71□□□□□ -1.66
TDP1Q9NUW8 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC4.71□□□□□ -1.66
TDP1Q9NUW8 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.71□□□□□ -1.66
TDP1Q9NUW8 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.71□□□□□ -1.66
TDP1Q9NUW8 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
TDP1Q9NUW8 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
TDP1Q9NUW8 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
TDP1Q9NUW8 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
TDP1Q9NUW8 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.71□□□□□ -1.66
TDP1Q9NUW8 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC4.71□□□□□ -1.66
TDP1Q9NUW8 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.66
TDP1Q9NUW8 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.7□□□□□ -1.66
TDP1Q9NUW8 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
TDP1Q9NUW8 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
TDP1Q9NUW8 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
TDP1Q9NUW8 AC095050.2-201ENST00000510748 1458 ntBASIC4.7□□□□□ -1.66
TDP1Q9NUW8 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
TDP1Q9NUW8 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
TDP1Q9NUW8 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.7□□□□□ -1.66
TDP1Q9NUW8 AL161781.1-201ENST00000354277 403 ntBASIC4.7□□□□□ -1.66
TDP1Q9NUW8 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
TDP1Q9NUW8 RNU6-853P-201ENST00000364306 107 ntBASIC4.7□□□□□ -1.66
TDP1Q9NUW8 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.7□□□□□ -1.66
TDP1Q9NUW8 AC011933.1-201ENST00000413334 321 ntBASIC4.7□□□□□ -1.66
TDP1Q9NUW8 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC4.7□□□□□ -1.66
TDP1Q9NUW8 MTND1P23-201ENST00000416931 372 ntBASIC4.7□□□□□ -1.66
TDP1Q9NUW8 CKS1BP6-201ENST00000424932 240 ntBASIC4.7□□□□□ -1.66
TDP1Q9NUW8 AC007742.1-201ENST00000425789 329 ntBASIC4.7□□□□□ -1.66
TDP1Q9NUW8 PSMA6P3-201ENST00000428242 164 ntBASIC4.7□□□□□ -1.66
TDP1Q9NUW8 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.7□□□□□ -1.66
TDP1Q9NUW8 ELOCP26-201ENST00000436067 329 ntBASIC4.7□□□□□ -1.66
TDP1Q9NUW8 RPL22P17-201ENST00000438729 315 ntBASIC4.7□□□□□ -1.66
TDP1Q9NUW8 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC4.7□□□□□ -1.66
TDP1Q9NUW8 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC4.7□□□□□ -1.66
TDP1Q9NUW8 MRPL48P1-201ENST00000445390 636 ntBASIC4.7□□□□□ -1.66
TDP1Q9NUW8 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC4.7□□□□□ -1.66
TDP1Q9NUW8 AC104651.2-201ENST00000447549 528 ntBASIC4.7□□□□□ -1.66
TDP1Q9NUW8 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC4.7□□□□□ -1.66
TDP1Q9NUW8 BX276092.4-201ENST00000452056 248 ntBASIC4.7□□□□□ -1.66
TDP1Q9NUW8 HMGB3P21-201ENST00000452483 547 ntBASIC4.7□□□□□ -1.66
TDP1Q9NUW8 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC4.7□□□□□ -1.66
TDP1Q9NUW8 AC099563.1-201ENST00000456086 418 ntBASIC4.7□□□□□ -1.66
TDP1Q9NUW8 CYCSP34-201ENST00000458172 304 ntBASIC4.7□□□□□ -1.66
TDP1Q9NUW8 AC116533.1-201ENST00000459748 321 ntBASIC4.7□□□□□ -1.66
TDP1Q9NUW8 AC004924.1-201ENST00000480160 781 ntBASIC4.7□□□□□ -1.66
TDP1Q9NUW8 AC034222.1-201ENST00000494052 532 ntBASIC4.7□□□□□ -1.66
TDP1Q9NUW8 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC4.7□□□□□ -1.66
TDP1Q9NUW8 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC4.7□□□□□ -1.66
TDP1Q9NUW8 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.7□□□□□ -1.66
TDP1Q9NUW8 AC022483.1-201ENST00000514020 567 ntBASIC4.7□□□□□ -1.66
TDP1Q9NUW8 RN7SKP277-201ENST00000516895 283 ntBASIC4.7□□□□□ -1.66
TDP1Q9NUW8 MTCO2P4-201ENST00000517968 247 ntBASIC4.7□□□□□ -1.66
TDP1Q9NUW8 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC4.7□□□□□ -1.66
TDP1Q9NUW8 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC4.7□□□□□ -1.66
TDP1Q9NUW8 CCNG2P1-201ENST00000549521 1000 ntBASIC4.7□□□□□ -1.66
TDP1Q9NUW8 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC4.7□□□□□ -1.66
TDP1Q9NUW8 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC4.7□□□□□ -1.66
TDP1Q9NUW8 AC084757.1-201ENST00000559987 490 ntBASIC4.7□□□□□ -1.66
TDP1Q9NUW8 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC4.7□□□□□ -1.66
TDP1Q9NUW8 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC4.7□□□□□ -1.66
TDP1Q9NUW8 HMGN1P30-201ENST00000589286 268 ntBASIC4.7□□□□□ -1.66
TDP1Q9NUW8 YWHAQP7-201ENST00000603536 658 ntBASIC4.7□□□□□ -1.66
TDP1Q9NUW8 AC007566.2-201ENST00000603642 413 ntBASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 133.2 ms