Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 AC016769.4-201ENST00000616893 535 ntBASIC3.67□□□□□ -1.82
CHMP1AQ9HD42 AL603755.1-201ENST00000619504 163 ntBASIC3.67□□□□□ -1.82
CHMP1AQ9HD42 AP005019.3-201ENST00000620418 560 ntBASIC3.67□□□□□ -1.82
CHMP1AQ9HD42 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC3.67□□□□□ -1.82
CHMP1AQ9HD42 PCMTD1P7-201ENST00000634506 357 ntBASIC3.67□□□□□ -1.82
CHMP1AQ9HD42 AC099063.3-201ENST00000642066 185 ntBASIC3.67□□□□□ -1.82
CHMP1AQ9HD42 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC3.67□□□□□ -1.82
CHMP1AQ9HD42 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
CHMP1AQ9HD42 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CHMP1AQ9HD42 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
CHMP1AQ9HD42 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC3.67□□□□□ -1.82
CHMP1AQ9HD42 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 TNPO1P3-201ENST00000436471 2662 ntBASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 AC008033.1-201ENST00000216407 1162 ntBASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 RNU6-553P-201ENST00000364047 96 ntBASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 SNORD6-201ENST00000365444 73 ntBASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 AC092642.1-201ENST00000392417 425 ntBASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 CASP3-203ENST00000393588 677 ntTSL 4 BASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 AL645927.1-201ENST00000396783 406 ntBASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 Z98941.1-201ENST00000407764 100 ntBASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 RNU2-47P-201ENST00000410649 186 ntBASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 EI24P1-201ENST00000416584 867 ntBASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 EIF1P3-201ENST00000423841 334 ntBASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 AL365396.1-201ENST00000430854 671 ntBASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 UBE2FP3-201ENST00000436366 524 ntBASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 HMGB3P22-202ENST00000451823 572 ntBASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 CEACAMP4-201ENST00000457676 421 ntBASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 RPL7L1P8-201ENST00000469911 741 ntBASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 AC072039.1-201ENST00000477611 581 ntBASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 AC025554.1-201ENST00000505641 188 ntBASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 AC093809.1-201ENST00000509155 340 ntBASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 LINC02057-202ENST00000511794 577 ntTSL 3 BASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 AC024589.1-201ENST00000512207 263 ntBASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 AL121603.1-201ENST00000553815 142 ntBASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 AC087481.2-201ENST00000565492 330 ntBASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 AL353997.4-201ENST00000586196 166 ntBASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 NAA60-237ENST00000615865 326 ntTSL 5 BASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 AC010608.2-201ENST00000624830 470 ntBASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 AC092192.1-201ENST00000633154 1018 ntBASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 FP325313.1-201ENST00000638228 703 ntBASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
CHMP1AQ9HD42 RAD17P1-201ENST00000418130 2042 ntBASIC3.65□□□□□ -1.82
CHMP1AQ9HD42 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.65□□□□□ -1.82
CHMP1AQ9HD42 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.83
CHMP1AQ9HD42 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
CHMP1AQ9HD42 RNA5SP175-201ENST00000364275 119 ntBASIC3.65□□□□□ -1.83
CHMP1AQ9HD42 Y_RNA.234-201ENST00000364409 97 ntBASIC3.65□□□□□ -1.83
CHMP1AQ9HD42 RNA5SP235-201ENST00000365411 114 ntBASIC3.65□□□□□ -1.83
CHMP1AQ9HD42 RN7SKP269-201ENST00000365545 319 ntBASIC3.65□□□□□ -1.83
CHMP1AQ9HD42 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.65□□□□□ -1.83
CHMP1AQ9HD42 SNORD116-8-201ENST00000384365 95 ntBASIC3.65□□□□□ -1.83
CHMP1AQ9HD42 MIR659-201ENST00000384963 97 ntBASIC3.65□□□□□ -1.83
CHMP1AQ9HD42 RNA5SP397-201ENST00000391323 118 ntBASIC3.65□□□□□ -1.83
CHMP1AQ9HD42 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
CHMP1AQ9HD42 MIR320C1-201ENST00000408566 88 ntBASIC3.65□□□□□ -1.83
CHMP1AQ9HD42 RHEBP3-201ENST00000411920 351 ntBASIC3.65□□□□□ -1.83
CHMP1AQ9HD42 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC3.65□□□□□ -1.83
CHMP1AQ9HD42 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC3.65□□□□□ -1.83
CHMP1AQ9HD42 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC3.65□□□□□ -1.83
CHMP1AQ9HD42 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC3.65□□□□□ -1.83
CHMP1AQ9HD42 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.65□□□□□ -1.83
CHMP1AQ9HD42 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC3.65□□□□□ -1.83
CHMP1AQ9HD42 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC3.65□□□□□ -1.83
CHMP1AQ9HD42 Z82190.1-201ENST00000454534 490 ntBASIC3.65□□□□□ -1.83
CHMP1AQ9HD42 RPL30P9-201ENST00000465586 330 ntBASIC3.65□□□□□ -1.83
CHMP1AQ9HD42 RPL12P20-201ENST00000475538 479 ntBASIC3.65□□□□□ -1.83
CHMP1AQ9HD42 AC007686.1-201ENST00000488511 463 ntBASIC3.65□□□□□ -1.83
CHMP1AQ9HD42 RPS4XP14-201ENST00000493072 781 ntBASIC3.65□□□□□ -1.83
CHMP1AQ9HD42 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC3.65□□□□□ -1.83
CHMP1AQ9HD42 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC3.65□□□□□ -1.83
CHMP1AQ9HD42 AC005178.1-201ENST00000508392 440 ntBASIC3.65□□□□□ -1.83
CHMP1AQ9HD42 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CHMP1AQ9HD42 OR7H2P-201ENST00000513483 306 ntBASIC3.65□□□□□ -1.83
CHMP1AQ9HD42 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC3.65□□□□□ -1.83
CHMP1AQ9HD42 SNORA31.20-201ENST00000517111 133 ntBASIC3.65□□□□□ -1.83
CHMP1AQ9HD42 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms