| MSL3 | Q8N5Y2 | A1CF-207 | ENST00000395495 | 9400 nt | TSL 5 BASIC | 5.13 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | LINC01102-204 | ENST00000451400 | 3778 nt | TSL 2 BASIC | 5.13 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | AC095050.2-201 | ENST00000510748 | 1458 nt | BASIC | 5.13 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | POSTN-210 | ENST00000541481 | 3113 nt | TSL 1 (best) BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | MBNL3-201 | ENST00000370839 | 1575 nt | APPRIS ALT1 TSL 1 (best) BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | TAB3-204 | ENST00000378932 | 3698 nt | TSL 1 (best) BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | MTCO1P14-201 | ENST00000441695 | 1559 nt | BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | MAP3K19-201 | ENST00000358371 | 3719 nt | TSL 1 (best) BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | MTUS1-203 | ENST00000381861 | 3996 nt | APPRIS P4 TSL 2 BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | AC008725.1-201 | ENST00000605123 | 2263 nt | BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | LRRC77P-206 | ENST00000481578 | 2350 nt | TSL 1 (best) BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | AL031985.3-201 | ENST00000565390 | 2449 nt | BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | OR6Y1-202 | ENST00000641282 | 3702 nt | APPRIS P1 BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | SGMS2-201 | ENST00000359079 | 1887 nt | APPRIS P1 TSL 1 (best) BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | RNU5F-6P-201 | ENST00000362979 | 116 nt | BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | RNU6-259P-201 | ENST00000383999 | 107 nt | BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | TAS2R19-201 | ENST00000390673 | 1002 nt | APPRIS P1 BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | LINC01492-202 | ENST00000425157 | 659 nt | TSL 5 BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | LINC01799-202 | ENST00000426260 | 625 nt | TSL 3 BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | LINC02541-201 | ENST00000427157 | 327 nt | TSL 3 BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | AC131571.1-201 | ENST00000429821 | 577 nt | TSL 5 BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | ZRANB2-AS2-204 | ENST00000430605 | 213 nt | TSL 2 BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | AC116035.1-201 | ENST00000431057 | 517 nt | TSL 3 BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | CEACAMP1-201 | ENST00000434624 | 1035 nt | BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | AC023669.2-201 | ENST00000436266 | 239 nt | TSL 3 BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | RPL23AP43-201 | ENST00000446445 | 471 nt | BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | ETV5-AS1-201 | ENST00000453370 | 560 nt | TSL 4 BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | AC096666.1-201 | ENST00000454965 | 348 nt | TSL 3 BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | SNRPGP5-201 | ENST00000456003 | 220 nt | BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | AC105137.1-201 | ENST00000484355 | 562 nt | BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | RPL7P24-201 | ENST00000493052 | 752 nt | BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | KRT19P6-201 | ENST00000510983 | 209 nt | BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | AC110296.1-201 | ENST00000515680 | 341 nt | TSL 3 BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | RNU6-488P-201 | ENST00000515918 | 99 nt | BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | RNU6-202P-201 | ENST00000515998 | 96 nt | BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | AC091489.2-201 | ENST00000566263 | 604 nt | BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | MIR4528-201 | ENST00000577763 | 90 nt | BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | AC090844.2-203 | ENST00000582263 | 632 nt | TSL 5 BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | AC017100.2-201 | ENST00000584628 | 355 nt | BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | AL606834.2-201 | ENST00000602954 | 668 nt | BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | ZYXP1-201 | ENST00000617638 | 118 nt | BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | FLG-AS1-207 | ENST00000628475 | 497 nt | TSL 5 BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | SEPT14P19-203 | ENST00000633205 | 211 nt | BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | CAPZA2-215 | ENST00000639546 | 129 nt | TSL 5 BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | ORMDL1-201 | ENST00000325795 | 2692 nt | APPRIS P1 TSL 1 (best) BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | DDR2-202 | ENST00000367922 | 10160 nt | APPRIS P1 TSL 1 (best) BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | SDHC-202 | ENST00000367975 | 13566 nt | APPRIS P1 TSL 1 (best) BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | ZBTB38-220 | ENST00000514251 | 7683 nt | APPRIS P1 TSL 2 BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | PRKACB-202 | ENST00000370682 | 4288 nt | TSL 1 (best) BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | BCLAF1-214 | ENST00000531224 | 7263 nt | APPRIS P3 TSL 1 (best) BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | CFHR3-206 | ENST00000617219 | 1462 nt | TSL 5 BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | AFTPH-205 | ENST00000422803 | 1525 nt | TSL 5 BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | STARD4-201 | ENST00000296632 | 4606 nt | APPRIS P1 TSL 2 BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | LINC00622-201 | ENST00000562811 | 1570 nt | BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | AL391684.1-202 | ENST00000641293 | 1636 nt | BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | THOC2-202 | ENST00000355725 | 4930 nt | APPRIS P1 TSL 5 BASIC | 5.12 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | FGD4-213 | ENST00000546442 | 3503 nt | TSL 5 BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | SYT16-205 | ENST00000568344 | 13978 nt | APPRIS P1 TSL 1 (best) BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | ABCA12-201 | ENST00000272895 | 9100 nt | APPRIS P1 TSL 1 (best) BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | HNMT-201 | ENST00000280096 | 504 nt | TSL 1 (best) BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | MIR448-201 | ENST00000362131 | 111 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | RNA5SP391-201 | ENST00000363456 | 119 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | CARD16-202 | ENST00000375706 | 686 nt | APPRIS P1 TSL 1 (best) BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | C9orf92-201 | ENST00000380683 | 359 nt | APPRIS P2 TSL 3 BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | MIR93-201 | ENST00000385024 | 80 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | OR8G2P-201 | ENST00000412796 | 908 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | AC002454.1-204 | ENST00000419668 | 527 nt | TSL 3 BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | AC064875.1-202 | ENST00000421112 | 561 nt | TSL 4 BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | LINC01074-201 | ENST00000422527 | 555 nt | TSL 3 BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | RPS27AP14-201 | ENST00000422868 | 454 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | MTND3P21-201 | ENST00000433774 | 331 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | AL139081.1-201 | ENST00000452207 | 382 nt | TSL 3 BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | LINC01069-201 | ENST00000452933 | 546 nt | TSL 5 BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | SNORD42A-201 | ENST00000459584 | 64 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | AC092994.1-201 | ENST00000498604 | 279 nt | TSL 3 BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | LINC02272-202 | ENST00000511399 | 607 nt | TSL 2 BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | AC099554.1-201 | ENST00000520032 | 572 nt | TSL 3 BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | AC084116.2-201 | ENST00000520171 | 415 nt | TSL 4 BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | AC068672.1-201 | ENST00000520391 | 328 nt | TSL 3 BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | AHI1-217 | ENST00000534469 | 680 nt | TSL 3 BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | ARL6IP1P1-201 | ENST00000545836 | 610 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | AC009803.2-201 | ENST00000550378 | 665 nt | TSL 5 BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | AL133166.1-201 | ENST00000551040 | 1034 nt | TSL 4 BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | AL161713.1-201 | ENST00000555538 | 145 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | MIR548AB-201 | ENST00000584917 | 84 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | AL022154.1-201 | ENST00000604698 | 785 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | ARF4P1-201 | ENST00000605447 | 541 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | LINC00993-204 | ENST00000606476 | 500 nt | TSL 5 BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | AC006566.1-201 | ENST00000608943 | 513 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | AC109347.2-201 | ENST00000610220 | 349 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | uc_338.13-201 | ENST00000618243 | 179 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | AC231657.1-201 | ENST00000624313 | 397 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | AL603839.4-201 | ENST00000624658 | 1005 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | AC019226.1-201 | ENST00000625666 | 515 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | CASP1-217 | ENST00000640184 | 327 nt | TSL 1 (best) BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | LPAR4-201 | ENST00000435339 | 2611 nt | APPRIS P1 TSL 1 (best) BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | SOBP-204 | ENST00000618129 | 1550 nt | TSL 1 (best) BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | P2RY12-201 | ENST00000302632 | 1766 nt | APPRIS P1 TSL 1 (best) BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | TMEM71-201 | ENST00000356838 | 1993 nt | APPRIS P3 TSL 1 (best) BASIC | 5.11 | □□□□□ -1.59 | | |
| MSL3 | Q8N5Y2 | TMEM71-210 | ENST00000523829 | 1974 nt | APPRIS ALT2 TSL 5 BASIC | 5.11 | □□□□□ -1.59 | | |