Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 AC027338.1-201ENST00000514840 825 ntBASIC3.34□□□□□ -1.87
HOXA9P31269 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXA9P31269 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
HOXA9P31269 AC010198.2-201ENST00000550612 259 ntBASIC3.34□□□□□ -1.87
HOXA9P31269 CR383656.14-201ENST00000551951 406 ntBASIC3.34□□□□□ -1.87
HOXA9P31269 AL136520.1-202ENST00000555494 763 ntBASIC3.34□□□□□ -1.87
HOXA9P31269 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXA9P31269 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.87
HOXA9P31269 AC097460.3-201ENST00000623099 442 ntBASIC3.34□□□□□ -1.87
HOXA9P31269 ZNF542P-204ENST00000482727 1305 ntBASIC3.34□□□□□ -1.87
HOXA9P31269 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
HOXA9P31269 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.34□□□□□ -1.88
HOXA9P31269 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXA9P31269 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXA9P31269 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
HOXA9P31269 RAD1P1-201ENST00000231383 813 ntBASIC3.33□□□□□ -1.88
HOXA9P31269 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXA9P31269 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXA9P31269 RNU6-185P-201ENST00000384421 107 ntBASIC3.33□□□□□ -1.88
HOXA9P31269 RNU6-1005P-201ENST00000384519 107 ntBASIC3.33□□□□□ -1.88
HOXA9P31269 AL590290.1-201ENST00000405336 380 ntBASIC3.33□□□□□ -1.88
HOXA9P31269 RPL31P12-201ENST00000422587 358 ntBASIC3.33□□□□□ -1.88
HOXA9P31269 PSMA2P3-201ENST00000429685 675 ntBASIC3.33□□□□□ -1.88
HOXA9P31269 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXA9P31269 HMGN2P20-201ENST00000437531 273 ntBASIC3.33□□□□□ -1.88
HOXA9P31269 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXA9P31269 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.33□□□□□ -1.88
HOXA9P31269 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.33□□□□□ -1.88
HOXA9P31269 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXA9P31269 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC3.33□□□□□ -1.88
HOXA9P31269 AC008628.1-201ENST00000508663 265 ntBASIC3.33□□□□□ -1.88
HOXA9P31269 AC093331.1-201ENST00000521474 169 ntBASIC3.33□□□□□ -1.88
HOXA9P31269 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXA9P31269 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HOXA9P31269 AC090616.5-202ENST00000582111 297 ntBASIC3.33□□□□□ -1.88
HOXA9P31269 MIR4298-201ENST00000584380 73 ntBASIC3.33□□□□□ -1.88
HOXA9P31269 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXA9P31269 AC016877.3-201ENST00000606778 504 ntBASIC3.33□□□□□ -1.88
HOXA9P31269 AP001033.2-201ENST00000609701 1003 ntBASIC3.33□□□□□ -1.88
HOXA9P31269 AC092574.1-201ENST00000609771 420 ntBASIC3.33□□□□□ -1.88
HOXA9P31269 uc_338.25-201ENST00000613756 156 ntBASIC3.33□□□□□ -1.88
HOXA9P31269 MIR6864-201ENST00000617935 70 ntBASIC3.33□□□□□ -1.88
HOXA9P31269 AC099506.2-201ENST00000623074 221 ntBASIC3.33□□□□□ -1.88
HOXA9P31269 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXA9P31269 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXA9P31269 FAM35BP-202ENST00000497389 3337 ntBASIC3.33□□□□□ -1.88
HOXA9P31269 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
HOXA9P31269 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXA9P31269 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
HOXA9P31269 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.32□□□□□ -1.88
HOXA9P31269 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
HOXA9P31269 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXA9P31269 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXA9P31269 RNU6-452P-201ENST00000384406 107 ntBASIC3.32□□□□□ -1.88
HOXA9P31269 SNORA48.8-201ENST00000391324 134 ntBASIC3.32□□□□□ -1.88
HOXA9P31269 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXA9P31269 RN7SKP220-201ENST00000410611 288 ntBASIC3.32□□□□□ -1.88
HOXA9P31269 RPS7P13-201ENST00000413955 498 ntBASIC3.32□□□□□ -1.88
HOXA9P31269 MTCO3P4-201ENST00000419236 787 ntBASIC3.32□□□□□ -1.88
HOXA9P31269 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXA9P31269 AL590103.1-201ENST00000434488 307 ntBASIC3.32□□□□□ -1.88
HOXA9P31269 AL512661.1-201ENST00000434586 1253 ntBASIC3.32□□□□□ -1.88
HOXA9P31269 RPL34P26-201ENST00000445636 354 ntBASIC3.32□□□□□ -1.88
HOXA9P31269 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXA9P31269 Z99127.3-201ENST00000448158 395 ntBASIC3.32□□□□□ -1.88
HOXA9P31269 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXA9P31269 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXA9P31269 NF1P3-201ENST00000457709 450 ntBASIC3.32□□□□□ -1.88
HOXA9P31269 AC010468.1-201ENST00000461022 817 ntBASIC3.32□□□□□ -1.88
HOXA9P31269 CYCSP20-201ENST00000473154 315 ntBASIC3.32□□□□□ -1.88
HOXA9P31269 UBE2DNL-203ENST00000474922 222 ntBASIC3.32□□□□□ -1.88
HOXA9P31269 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXA9P31269 AC012181.1-201ENST00000479895 423 ntBASIC3.32□□□□□ -1.88
HOXA9P31269 AC069306.1-201ENST00000507006 843 ntBASIC3.32□□□□□ -1.88
HOXA9P31269 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXA9P31269 SNORA31.13-201ENST00000516624 135 ntBASIC3.32□□□□□ -1.88
HOXA9P31269 MAL2-205ENST00000521048 575 ntTSL 4 BASIC3.32□□□□□ -1.88
HOXA9P31269 CIR1P1-201ENST00000524055 1133 ntBASIC3.32□□□□□ -1.88
HOXA9P31269 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXA9P31269 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HOXA9P31269 OR4T1P-201ENST00000554933 911 ntBASIC3.32□□□□□ -1.88
HOXA9P31269 MIR3690-201ENST00000580266 75 ntBASIC3.32□□□□□ -1.88
HOXA9P31269 UBL5P2-201ENST00000583788 219 ntBASIC3.32□□□□□ -1.88
HOXA9P31269 AC008507.1-201ENST00000587506 734 ntBASIC3.32□□□□□ -1.88
HOXA9P31269 IGHV3-29-201ENST00000604817 344 ntBASIC3.32□□□□□ -1.88
HOXA9P31269 AL158211.2-201ENST00000607282 395 ntBASIC3.32□□□□□ -1.88
HOXA9P31269 MIR7106-201ENST00000612419 65 ntBASIC3.32□□□□□ -1.88
HOXA9P31269 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HOXA9P31269 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
HOXA9P31269 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
HOXA9P31269 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXA9P31269 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HOXA9P31269 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.31□□□□□ -1.88
HOXA9P31269 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HOXA9P31269 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
HOXA9P31269 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC3.31□□□□□ -1.88
HOXA9P31269 MTND4P34-201ENST00000572715 1371 ntBASIC3.31□□□□□ -1.88
HOXA9P31269 SNORA54-201ENST00000384281 123 ntBASIC3.31□□□□□ -1.88
HOXA9P31269 RNU6-796P-201ENST00000391086 107 ntBASIC3.31□□□□□ -1.88
HOXA9P31269 AL355379.1-201ENST00000405542 640 ntBASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 112.1 ms