Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 PNKDP1-201ENST00000435914 430 ntBASIC5.71□□□□□ -1.5
MSX1P28360 RPL35AP22-201ENST00000436855 335 ntBASIC5.71□□□□□ -1.5
MSX1P28360 KRTAP2-5P-201ENST00000446109 396 ntBASIC5.71□□□□□ -1.5
MSX1P28360 RPS17P13-201ENST00000448974 407 ntBASIC5.71□□□□□ -1.5
MSX1P28360 PPIAP3-201ENST00000450588 505 ntBASIC5.71□□□□□ -1.5
MSX1P28360 AC087884.1-201ENST00000469738 328 ntBASIC5.71□□□□□ -1.5
MSX1P28360 RPS27AP1-201ENST00000475545 471 ntBASIC5.71□□□□□ -1.5
MSX1P28360 RN7SL165P-201ENST00000477476 291 ntBASIC5.71□□□□□ -1.5
MSX1P28360 AP001086.1-201ENST00000494882 321 ntBASIC5.71□□□□□ -1.5
MSX1P28360 AC135721.1-201ENST00000497954 479 ntBASIC5.71□□□□□ -1.5
MSX1P28360 AC083829.1-201ENST00000503756 657 ntBASIC5.71□□□□□ -1.5
MSX1P28360 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC5.71□□□□□ -1.5
MSX1P28360 GAPDHP62-201ENST00000515313 990 ntBASIC5.71□□□□□ -1.5
MSX1P28360 SNORA25.11-201ENST00000515935 105 ntBASIC5.71□□□□□ -1.5
MSX1P28360 RNU4ATAC10P-201ENST00000516967 122 ntBASIC5.71□□□□□ -1.5
MSX1P28360 SNORA81.3-201ENST00000517283 198 ntBASIC5.71□□□□□ -1.5
MSX1P28360 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC5.71□□□□□ -1.5
MSX1P28360 IGKV2D-23-201ENST00000518179 286 ntBASIC5.71□□□□□ -1.5
MSX1P28360 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC5.71□□□□□ -1.5
MSX1P28360 SETP7-201ENST00000552169 453 ntBASIC5.71□□□□□ -1.5
MSX1P28360 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC5.71□□□□□ -1.5
MSX1P28360 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC5.71□□□□□ -1.5
MSX1P28360 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC5.71□□□□□ -1.5
MSX1P28360 MIR3910-1-201ENST00000580936 111 ntBASIC5.71□□□□□ -1.5
MSX1P28360 MIR4420-201ENST00000583944 77 ntBASIC5.71□□□□□ -1.5
MSX1P28360 HMGB2P1-201ENST00000591146 634 ntBASIC5.71□□□□□ -1.5
MSX1P28360 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC5.71□□□□□ -1.5
MSX1P28360 AL031176.1-201ENST00000604554 466 ntBASIC5.71□□□□□ -1.5
MSX1P28360 SDR42E1P2-201ENST00000614861 481 ntBASIC5.71□□□□□ -1.5
MSX1P28360 SDR42E1P4-201ENST00000620894 481 ntBASIC5.71□□□□□ -1.5
MSX1P28360 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
MSX1P28360 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
MSX1P28360 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC5.71□□□□□ -1.5
MSX1P28360 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC5.71□□□□□ -1.5
MSX1P28360 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC5.71□□□□□ -1.5
MSX1P28360 RBPJP2-201ENST00000618187 1444 ntBASIC5.71□□□□□ -1.5
MSX1P28360 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
MSX1P28360 AC004158.1-201ENST00000564508 4319 ntBASIC5.71□□□□□ -1.5
MSX1P28360 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
MSX1P28360 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
MSX1P28360 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC5.71□□□□□ -1.5
MSX1P28360 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
MSX1P28360 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
MSX1P28360 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
MSX1P28360 MUSK-206ENST00000416899 3344 ntTSL 5 BASIC5.71□□□□□ -1.5
MSX1P28360 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
MSX1P28360 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
MSX1P28360 CREM-217ENST00000439705 2306 ntTSL 5 BASIC5.7□□□□□ -1.5
MSX1P28360 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC5.7□□□□□ -1.5
MSX1P28360 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
MSX1P28360 PABPC1P7-201ENST00000413177 1513 ntBASIC5.7□□□□□ -1.5
MSX1P28360 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.7□□□□□ -1.5
MSX1P28360 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.7□□□□□ -1.5
MSX1P28360 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC5.7□□□□□ -1.5
MSX1P28360 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC5.7□□□□□ -1.5
MSX1P28360 OSBPL9P4-201ENST00000371707 1800 ntBASIC5.7□□□□□ -1.5
MSX1P28360 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC5.7□□□□□ -1.5
MSX1P28360 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
MSX1P28360 Y_RNA.64-201ENST00000362845 102 ntBASIC5.7□□□□□ -1.5
MSX1P28360 RNU6-1284P-201ENST00000363701 100 ntBASIC5.7□□□□□ -1.5
MSX1P28360 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
MSX1P28360 RNU6-946P-201ENST00000383878 107 ntBASIC5.7□□□□□ -1.5
MSX1P28360 RNU6-746P-201ENST00000384112 109 ntBASIC5.7□□□□□ -1.5
MSX1P28360 RNU6-432P-201ENST00000384196 109 ntBASIC5.7□□□□□ -1.5
MSX1P28360 AC110754.1-201ENST00000399740 601 ntBASIC5.7□□□□□ -1.5
MSX1P28360 AP000580.1-201ENST00000404439 358 ntBASIC5.7□□□□□ -1.5
MSX1P28360 RNU6-516P-201ENST00000411381 104 ntBASIC5.7□□□□□ -1.5
MSX1P28360 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC5.7□□□□□ -1.5
MSX1P28360 HMGA1P8-201ENST00000414130 321 ntBASIC5.7□□□□□ -1.5
MSX1P28360 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC5.7□□□□□ -1.5
MSX1P28360 AL360081.1-201ENST00000428299 555 ntBASIC5.7□□□□□ -1.5
MSX1P28360 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC5.7□□□□□ -1.5
MSX1P28360 AL645568.3-201ENST00000433683 316 ntBASIC5.7□□□□□ -1.5
MSX1P28360 AL445928.1-201ENST00000435545 222 ntBASIC5.7□□□□□ -1.5
MSX1P28360 CHEK2P4-201ENST00000450340 246 ntBASIC5.7□□□□□ -1.5
MSX1P28360 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC5.7□□□□□ -1.5
MSX1P28360 AC006511.1-201ENST00000470614 315 ntBASIC5.7□□□□□ -1.5
MSX1P28360 RN7SL432P-201ENST00000484057 298 ntBASIC5.7□□□□□ -1.5
MSX1P28360 LSM3P4-201ENST00000502948 309 ntBASIC5.7□□□□□ -1.5
MSX1P28360 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC5.7□□□□□ -1.5
MSX1P28360 RN7SKP92-201ENST00000517266 244 ntBASIC5.7□□□□□ -1.5
MSX1P28360 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC5.7□□□□□ -1.5
MSX1P28360 CYCSP38-201ENST00000559840 322 ntBASIC5.7□□□□□ -1.5
MSX1P28360 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC5.7□□□□□ -1.5
MSX1P28360 RPL23AP84-201ENST00000571193 464 ntBASIC5.7□□□□□ -1.5
MSX1P28360 AL359547.2-201ENST00000615810 418 ntBASIC5.7□□□□□ -1.5
MSX1P28360 MIR4302-201ENST00000638058 60 ntBASIC5.7□□□□□ -1.5
MSX1P28360 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
MSX1P28360 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
MSX1P28360 AC008669.1-201ENST00000565823 2178 ntBASIC5.7□□□□□ -1.5
MSX1P28360 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
MSX1P28360 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC5.7□□□□□ -1.5
MSX1P28360 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
MSX1P28360 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC5.7□□□□□ -1.5
MSX1P28360 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
MSX1P28360 DMD-222ENST00000474231 5209 ntTSL 5 BASIC5.7□□□□□ -1.5
MSX1P28360 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC5.69□□□□□ -1.5
MSX1P28360 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
MSX1P28360 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
MSX1P28360 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms