Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
SHOX2O60902 RNA5SP295-201ENST00000362655 121 ntBASIC3.1□□□□□ -1.91
SHOX2O60902 RNA5SP124-201ENST00000362739 110 ntBASIC3.1□□□□□ -1.91
SHOX2O60902 SNORD17-201ENST00000390930 237 ntBASIC3.1□□□□□ -1.91
SHOX2O60902 AL122016.1-201ENST00000403365 367 ntBASIC3.1□□□□□ -1.91
SHOX2O60902 BTBD10P2-201ENST00000404779 676 ntBASIC3.1□□□□□ -1.91
SHOX2O60902 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC3.1□□□□□ -1.91
SHOX2O60902 RAB9AP3-201ENST00000412737 573 ntBASIC3.1□□□□□ -1.91
SHOX2O60902 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC3.1□□□□□ -1.91
SHOX2O60902 ATP5JP1-201ENST00000431631 322 ntBASIC3.1□□□□□ -1.91
SHOX2O60902 AC069540.1-201ENST00000446320 988 ntBASIC3.1□□□□□ -1.91
SHOX2O60902 PRDX3P3-201ENST00000447765 522 ntBASIC3.1□□□□□ -1.91
SHOX2O60902 AC092685.1-201ENST00000447960 1243 ntBASIC3.1□□□□□ -1.91
SHOX2O60902 RAB9AP1-201ENST00000449393 573 ntBASIC3.1□□□□□ -1.91
SHOX2O60902 SLC31A1P1-201ENST00000451221 567 ntBASIC3.1□□□□□ -1.91
SHOX2O60902 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.1□□□□□ -1.91
SHOX2O60902 SNORD105B-201ENST00000458770 79 ntBASIC3.1□□□□□ -1.91
SHOX2O60902 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
SHOX2O60902 NCOR1P1-202ENST00000486162 291 ntBASIC3.1□□□□□ -1.91
SHOX2O60902 HMGB3P15-201ENST00000507326 574 ntBASIC3.1□□□□□ -1.91
SHOX2O60902 AC008494.2-201ENST00000514544 370 ntBASIC3.1□□□□□ -1.91
SHOX2O60902 RN7SKP18-201ENST00000516005 275 ntBASIC3.1□□□□□ -1.91
SHOX2O60902 RN7SKP283-201ENST00000517197 270 ntBASIC3.1□□□□□ -1.91
SHOX2O60902 IGKV2-26-201ENST00000518305 343 ntBASIC3.1□□□□□ -1.91
SHOX2O60902 AC027309.2-201ENST00000520566 192 ntBASIC3.1□□□□□ -1.91
SHOX2O60902 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC3.1□□□□□ -1.91
SHOX2O60902 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC3.1□□□□□ -1.91
SHOX2O60902 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC3.1□□□□□ -1.91
SHOX2O60902 MIR3690-201ENST00000580266 75 ntBASIC3.1□□□□□ -1.91
SHOX2O60902 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC3.1□□□□□ -1.91
SHOX2O60902 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC3.1□□□□□ -1.91
SHOX2O60902 AC005972.3-201ENST00000606304 481 ntBASIC3.1□□□□□ -1.91
SHOX2O60902 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC3.1□□□□□ -1.91
SHOX2O60902 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.1□□□□□ -1.91
SHOX2O60902 AL157817.1-201ENST00000614264 790 ntBASIC3.1□□□□□ -1.91
SHOX2O60902 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.1□□□□□ -1.91
SHOX2O60902 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.1□□□□□ -1.91
SHOX2O60902 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.1□□□□□ -1.91
SHOX2O60902 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SHOX2O60902 ZNF285B-201ENST00000561698 1767 ntBASIC3.1□□□□□ -1.91
SHOX2O60902 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.09□□□□□ -1.91
SHOX2O60902 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.09□□□□□ -1.91
SHOX2O60902 AC006378.2-201ENST00000623178 2476 ntBASIC3.09□□□□□ -1.91
SHOX2O60902 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
SHOX2O60902 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
SHOX2O60902 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
SHOX2O60902 RNU4-35P-201ENST00000362588 141 ntBASIC3.09□□□□□ -1.91
SHOX2O60902 SNORA51.2-201ENST00000364595 132 ntBASIC3.09□□□□□ -1.91
SHOX2O60902 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC3.09□□□□□ -1.91
SHOX2O60902 OR52E6-202ENST00000379946 954 ntBASIC3.09□□□□□ -1.91
SHOX2O60902 U3.26-201ENST00000391236 204 ntBASIC3.09□□□□□ -1.91
SHOX2O60902 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
SHOX2O60902 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC3.09□□□□□ -1.91
SHOX2O60902 AL139095.1-201ENST00000404326 391 ntBASIC3.09□□□□□ -1.91
SHOX2O60902 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC3.09□□□□□ -1.91
SHOX2O60902 OR51AB1P-201ENST00000429046 620 ntBASIC3.09□□□□□ -1.91
SHOX2O60902 HMGB1P12-201ENST00000438594 598 ntBASIC3.09□□□□□ -1.91
SHOX2O60902 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC3.09□□□□□ -1.91
SHOX2O60902 HSPE1P28-201ENST00000443139 211 ntBASIC3.09□□□□□ -1.91
SHOX2O60902 Z77249.1-201ENST00000444622 1175 ntBASIC3.09□□□□□ -1.91
SHOX2O60902 ELOCP23-201ENST00000452014 332 ntBASIC3.09□□□□□ -1.91
SHOX2O60902 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC3.09□□□□□ -1.91
SHOX2O60902 snoU13.7-201ENST00000459220 104 ntBASIC3.09□□□□□ -1.91
SHOX2O60902 AC092754.2-201ENST00000463506 460 ntBASIC3.09□□□□□ -1.91
SHOX2O60902 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC3.09□□□□□ -1.91
SHOX2O60902 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC3.09□□□□□ -1.91
SHOX2O60902 RPL21P13-201ENST00000488305 481 ntBASIC3.09□□□□□ -1.91
SHOX2O60902 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC3.09□□□□□ -1.91
SHOX2O60902 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC3.09□□□□□ -1.91
SHOX2O60902 RNU6-760P-201ENST00000516078 97 ntBASIC3.09□□□□□ -1.91
SHOX2O60902 RN7SKP96-201ENST00000516948 297 ntBASIC3.09□□□□□ -1.91
SHOX2O60902 ELOCP31-201ENST00000540463 467 ntBASIC3.09□□□□□ -1.91
SHOX2O60902 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC3.09□□□□□ -1.91
SHOX2O60902 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.09□□□□□ -1.91
SHOX2O60902 CBX3P2-202ENST00000583365 535 ntBASIC3.09□□□□□ -1.91
SHOX2O60902 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC3.09□□□□□ -1.91
SHOX2O60902 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.09□□□□□ -1.91
SHOX2O60902 AL020991.1-201ENST00000612314 373 ntBASIC3.09□□□□□ -1.91
SHOX2O60902 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.09□□□□□ -1.91
SHOX2O60902 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
SHOX2O60902 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.92
SHOX2O60902 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.08□□□□□ -1.92
SHOX2O60902 AL359693.1-201ENST00000614959 2407 ntBASIC3.08□□□□□ -1.92
SHOX2O60902 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.08□□□□□ -1.92
SHOX2O60902 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.08□□□□□ -1.92
SHOX2O60902 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.08□□□□□ -1.92
SHOX2O60902 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
SHOX2O60902 AC110754.1-201ENST00000399740 601 ntBASIC3.08□□□□□ -1.92
SHOX2O60902 RPL7P10-201ENST00000417407 739 ntBASIC3.08□□□□□ -1.92
SHOX2O60902 LINC01347-201ENST00000417964 355 ntBASIC3.08□□□□□ -1.92
SHOX2O60902 AC244098.2-201ENST00000422068 99 ntBASIC3.08□□□□□ -1.92
SHOX2O60902 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC3.08□□□□□ -1.92
SHOX2O60902 ZYG11AP1-201ENST00000430329 837 ntBASIC3.08□□□□□ -1.92
SHOX2O60902 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC3.08□□□□□ -1.92
SHOX2O60902 AC097499.1-201ENST00000444277 208 ntBASIC3.08□□□□□ -1.92
SHOX2O60902 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
SHOX2O60902 AC073387.1-201ENST00000453261 709 ntBASIC3.08□□□□□ -1.92
SHOX2O60902 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.08□□□□□ -1.92
SHOX2O60902 RPL21P104-201ENST00000464143 478 ntBASIC3.08□□□□□ -1.92
SHOX2O60902 AL136126.1-201ENST00000473603 402 ntBASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms