Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC4.37□□□□□ -1.71
VPS4AQ9UN37 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC4.37□□□□□ -1.71
VPS4AQ9UN37 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.37□□□□□ -1.71
VPS4AQ9UN37 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.37□□□□□ -1.71
VPS4AQ9UN37 AC105402.2-201ENST00000438503 358 ntBASIC4.37□□□□□ -1.71
VPS4AQ9UN37 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC4.37□□□□□ -1.71
VPS4AQ9UN37 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC4.37□□□□□ -1.71
VPS4AQ9UN37 MEMO1P3-201ENST00000459811 302 ntBASIC4.37□□□□□ -1.71
VPS4AQ9UN37 RPL23AP2-201ENST00000471227 466 ntBASIC4.37□□□□□ -1.71
VPS4AQ9UN37 AC012158.1-204ENST00000483430 465 ntBASIC4.37□□□□□ -1.71
VPS4AQ9UN37 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC4.37□□□□□ -1.71
VPS4AQ9UN37 TMEM251P1-201ENST00000503717 318 ntBASIC4.37□□□□□ -1.71
VPS4AQ9UN37 SCARNA22-201ENST00000503991 125 ntBASIC4.37□□□□□ -1.71
VPS4AQ9UN37 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC4.37□□□□□ -1.71
VPS4AQ9UN37 ARL2BPP4-201ENST00000506854 471 ntBASIC4.37□□□□□ -1.71
VPS4AQ9UN37 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC4.37□□□□□ -1.71
VPS4AQ9UN37 AC010625.1-201ENST00000511296 403 ntBASIC4.37□□□□□ -1.71
VPS4AQ9UN37 AC026412.2-201ENST00000512270 1075 ntBASIC4.37□□□□□ -1.71
VPS4AQ9UN37 RNA5SP446-201ENST00000515955 82 ntBASIC4.37□□□□□ -1.71
VPS4AQ9UN37 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC4.37□□□□□ -1.71
VPS4AQ9UN37 LSM6P2-201ENST00000552208 177 ntBASIC4.37□□□□□ -1.71
VPS4AQ9UN37 AGGF1P8-201ENST00000562979 1000 ntBASIC4.37□□□□□ -1.71
VPS4AQ9UN37 EIF1P4-201ENST00000572664 335 ntBASIC4.37□□□□□ -1.71
VPS4AQ9UN37 AC083760.1-201ENST00000589621 670 ntBASIC4.37□□□□□ -1.71
VPS4AQ9UN37 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.37□□□□□ -1.71
VPS4AQ9UN37 RPL7P50-201ENST00000600588 727 ntBASIC4.37□□□□□ -1.71
VPS4AQ9UN37 AC112187.2-201ENST00000604345 283 ntBASIC4.37□□□□□ -1.71
VPS4AQ9UN37 AC091979.2-201ENST00000607514 214 ntBASIC4.37□□□□□ -1.71
VPS4AQ9UN37 AC087241.4-201ENST00000612441 480 ntBASIC4.37□□□□□ -1.71
VPS4AQ9UN37 AL357080.1-201ENST00000617394 239 ntBASIC4.37□□□□□ -1.71
VPS4AQ9UN37 DLEU1_2.1-201ENST00000617920 342 ntBASIC4.37□□□□□ -1.71
VPS4AQ9UN37 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.37□□□□□ -1.71
VPS4AQ9UN37 OR5BE1P-202ENST00000641168 1176 ntBASIC4.37□□□□□ -1.71
VPS4AQ9UN37 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
VPS4AQ9UN37 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC4.37□□□□□ -1.71
VPS4AQ9UN37 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
VPS4AQ9UN37 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.37□□□□□ -1.71
VPS4AQ9UN37 AC130650.2-201ENST00000618736 2403 ntBASIC4.36□□□□□ -1.71
VPS4AQ9UN37 AC017104.4-201ENST00000636283 1592 ntBASIC4.36□□□□□ -1.71
VPS4AQ9UN37 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.36□□□□□ -1.71
VPS4AQ9UN37 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.36□□□□□ -1.71
VPS4AQ9UN37 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS4AQ9UN37 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
VPS4AQ9UN37 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.36□□□□□ -1.71
VPS4AQ9UN37 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS4AQ9UN37 RNU5F-6P-201ENST00000362979 116 ntBASIC4.36□□□□□ -1.71
VPS4AQ9UN37 RNU6-1226P-201ENST00000384317 107 ntBASIC4.36□□□□□ -1.71
VPS4AQ9UN37 SNORA70C-201ENST00000384538 135 ntBASIC4.36□□□□□ -1.71
VPS4AQ9UN37 RNA5SP397-201ENST00000391323 118 ntBASIC4.36□□□□□ -1.71
VPS4AQ9UN37 EIF5P1-201ENST00000400019 1231 ntBASIC4.36□□□□□ -1.71
VPS4AQ9UN37 AL121972.1-201ENST00000402023 252 ntBASIC4.36□□□□□ -1.71
VPS4AQ9UN37 AL445189.1-201ENST00000405722 338 ntBASIC4.36□□□□□ -1.71
VPS4AQ9UN37 AL023807.1-201ENST00000407932 359 ntBASIC4.36□□□□□ -1.71
VPS4AQ9UN37 RPS27AP14-201ENST00000422868 454 ntBASIC4.36□□□□□ -1.71
VPS4AQ9UN37 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC4.36□□□□□ -1.71
VPS4AQ9UN37 RPL23AP25-201ENST00000430973 463 ntBASIC4.36□□□□□ -1.71
VPS4AQ9UN37 PRELID3BP10-201ENST00000431957 584 ntBASIC4.36□□□□□ -1.71
VPS4AQ9UN37 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC4.36□□□□□ -1.71
VPS4AQ9UN37 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC4.36□□□□□ -1.71
VPS4AQ9UN37 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC4.36□□□□□ -1.71
VPS4AQ9UN37 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
VPS4AQ9UN37 SSXP1-201ENST00000453640 473 ntBASIC4.36□□□□□ -1.71
VPS4AQ9UN37 USP9YP34-201ENST00000453983 808 ntBASIC4.36□□□□□ -1.71
VPS4AQ9UN37 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.36□□□□□ -1.71
VPS4AQ9UN37 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC4.36□□□□□ -1.71
VPS4AQ9UN37 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC4.36□□□□□ -1.71
VPS4AQ9UN37 AC007016.1-201ENST00000512110 244 ntBASIC4.36□□□□□ -1.71
VPS4AQ9UN37 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC4.36□□□□□ -1.71
VPS4AQ9UN37 RNU6-150P-201ENST00000516237 95 ntBASIC4.36□□□□□ -1.71
VPS4AQ9UN37 SNORA31.9-201ENST00000516429 84 ntBASIC4.36□□□□□ -1.71
VPS4AQ9UN37 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC4.36□□□□□ -1.71
VPS4AQ9UN37 AC068587.4-201ENST00000533893 186 ntBASIC4.36□□□□□ -1.71
VPS4AQ9UN37 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
VPS4AQ9UN37 AC106785.1-201ENST00000565935 262 ntBASIC4.36□□□□□ -1.71
VPS4AQ9UN37 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC4.36□□□□□ -1.71
VPS4AQ9UN37 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC4.36□□□□□ -1.71
VPS4AQ9UN37 RN7SL652P-201ENST00000577769 300 ntBASIC4.36□□□□□ -1.71
VPS4AQ9UN37 SLC25A36P1-201ENST00000590111 465 ntBASIC4.36□□□□□ -1.71
VPS4AQ9UN37 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC4.36□□□□□ -1.71
VPS4AQ9UN37 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
VPS4AQ9UN37 AC025588.4-201ENST00000615802 908 ntBASIC4.36□□□□□ -1.71
VPS4AQ9UN37 AC015540.1-201ENST00000615828 501 ntBASIC4.36□□□□□ -1.71
VPS4AQ9UN37 ZYXP1-201ENST00000617638 118 ntBASIC4.36□□□□□ -1.71
VPS4AQ9UN37 AP005019.3-201ENST00000620418 560 ntBASIC4.36□□□□□ -1.71
VPS4AQ9UN37 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS4AQ9UN37 GDI2P1-201ENST00000429312 1336 ntBASIC4.36□□□□□ -1.71
VPS4AQ9UN37 MTND4P16-201ENST00000466108 1367 ntBASIC4.36□□□□□ -1.71
VPS4AQ9UN37 AP002907.1-201ENST00000606361 1430 ntBASIC4.36□□□□□ -1.71
VPS4AQ9UN37 AL356489.2-201ENST00000566968 3528 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 AL391684.1-202ENST00000641293 1636 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 AC074029.4-201ENST00000624796 1859 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 RNU1-108P-201ENST00000362556 161 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 RNA5SP513-201ENST00000364648 118 ntBASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 248.4 ms