Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC3.53□□□□□ -1.84
DDX28Q9NUL7 AC022916.3-201ENST00000592961 742 ntBASIC3.53□□□□□ -1.84
DDX28Q9NUL7 AL035411.2-201ENST00000604022 421 ntBASIC3.53□□□□□ -1.84
DDX28Q9NUL7 AC245389.1-201ENST00000605141 529 ntBASIC3.53□□□□□ -1.84
DDX28Q9NUL7 BRDTP1-201ENST00000605735 677 ntBASIC3.53□□□□□ -1.84
DDX28Q9NUL7 AC024933.1-201ENST00000608472 348 ntBASIC3.53□□□□□ -1.84
DDX28Q9NUL7 AC024257.5-201ENST00000612739 531 ntBASIC3.53□□□□□ -1.84
DDX28Q9NUL7 AC008083.4-201ENST00000615076 444 ntBASIC3.53□□□□□ -1.84
DDX28Q9NUL7 AC073968.1-201ENST00000618594 637 ntBASIC3.53□□□□□ -1.84
DDX28Q9NUL7 AC010608.2-201ENST00000624830 470 ntBASIC3.53□□□□□ -1.84
DDX28Q9NUL7 RNA5SP196-201ENST00000625967 102 ntBASIC3.53□□□□□ -1.84
DDX28Q9NUL7 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
DDX28Q9NUL7 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC3.53□□□□□ -1.84
DDX28Q9NUL7 MKKS-204ENST00000639674 192 ntBASIC3.53□□□□□ -1.84
DDX28Q9NUL7 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.53□□□□□ -1.84
DDX28Q9NUL7 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
DDX28Q9NUL7 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.53□□□□□ -1.84
DDX28Q9NUL7 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.53□□□□□ -1.84
DDX28Q9NUL7 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
DDX28Q9NUL7 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
DDX28Q9NUL7 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 AC092326.2-201ENST00000624772 1561 ntBASIC3.52□□□□□ -1.85
DDX28Q9NUL7 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 ZNF33BP1-201ENST00000452497 1834 ntBASIC3.52□□□□□ -1.85
DDX28Q9NUL7 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 Y_RNA.493-201ENST00000384422 102 ntBASIC3.52□□□□□ -1.85
DDX28Q9NUL7 SNORD116-12-201ENST00000384468 92 ntBASIC3.52□□□□□ -1.85
DDX28Q9NUL7 RNU11-4P-201ENST00000391149 133 ntBASIC3.52□□□□□ -1.85
DDX28Q9NUL7 PPIAP31-201ENST00000405422 495 ntBASIC3.52□□□□□ -1.85
DDX28Q9NUL7 RNU2-28P-201ENST00000410457 189 ntBASIC3.52□□□□□ -1.85
DDX28Q9NUL7 HSPE1P12-201ENST00000412576 301 ntBASIC3.52□□□□□ -1.85
DDX28Q9NUL7 TPT1P2-201ENST00000413105 503 ntBASIC3.52□□□□□ -1.85
DDX28Q9NUL7 EI24P1-201ENST00000416584 867 ntBASIC3.52□□□□□ -1.85
DDX28Q9NUL7 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 AC002075.2-201ENST00000425207 252 ntBASIC3.52□□□□□ -1.85
DDX28Q9NUL7 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 AL035410.1-201ENST00000427409 427 ntBASIC3.52□□□□□ -1.85
DDX28Q9NUL7 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 RPS4XP4-201ENST00000443195 763 ntBASIC3.52□□□□□ -1.85
DDX28Q9NUL7 AL031313.1-201ENST00000448435 256 ntBASIC3.52□□□□□ -1.85
DDX28Q9NUL7 EXOSC3P1-201ENST00000448649 500 ntBASIC3.52□□□□□ -1.85
DDX28Q9NUL7 SLC31A1P1-201ENST00000451221 567 ntBASIC3.52□□□□□ -1.85
DDX28Q9NUL7 AL132838.2-201ENST00000492041 314 ntBASIC3.52□□□□□ -1.85
DDX28Q9NUL7 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 AC113420.1-201ENST00000507903 571 ntBASIC3.52□□□□□ -1.85
DDX28Q9NUL7 MTCYBP16-201ENST00000509187 1129 ntBASIC3.52□□□□□ -1.85
DDX28Q9NUL7 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 RN7SKP83-201ENST00000516512 178 ntBASIC3.52□□□□□ -1.85
DDX28Q9NUL7 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 RPL12P22-201ENST00000519073 490 ntBASIC3.52□□□□□ -1.85
DDX28Q9NUL7 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 IGHV3-76-201ENST00000522465 295 ntBASIC3.52□□□□□ -1.85
DDX28Q9NUL7 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 TRAV15-201ENST00000556680 249 ntBASIC3.52□□□□□ -1.85
DDX28Q9NUL7 MTCYBP23-201ENST00000558717 1102 ntBASIC3.52□□□□□ -1.85
DDX28Q9NUL7 MTND3P13-201ENST00000574391 343 ntBASIC3.52□□□□□ -1.85
DDX28Q9NUL7 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 AL669831.4-202ENST00000590817 238 ntBASIC3.52□□□□□ -1.85
DDX28Q9NUL7 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 AC005332.6-201ENST00000613178 446 ntBASIC3.52□□□□□ -1.85
DDX28Q9NUL7 AL121895.2-201ENST00000619558 447 ntBASIC3.52□□□□□ -1.85
DDX28Q9NUL7 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 OR6C71P-202ENST00000641886 1107 ntBASIC3.52□□□□□ -1.85
DDX28Q9NUL7 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC3.52□□□□□ -1.85
DDX28Q9NUL7 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
DDX28Q9NUL7 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
DDX28Q9NUL7 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.51□□□□□ -1.85
DDX28Q9NUL7 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
DDX28Q9NUL7 RNA5SP295-201ENST00000362655 121 ntBASIC3.51□□□□□ -1.85
DDX28Q9NUL7 RN7SKP280-201ENST00000364196 304 ntBASIC3.51□□□□□ -1.85
DDX28Q9NUL7 RNU6-761P-201ENST00000384148 107 ntBASIC3.51□□□□□ -1.85
DDX28Q9NUL7 MIR506-201ENST00000384998 124 ntBASIC3.51□□□□□ -1.85
DDX28Q9NUL7 RNU6-837P-201ENST00000391056 108 ntBASIC3.51□□□□□ -1.85
DDX28Q9NUL7 AL024474.1-201ENST00000404655 591 ntBASIC3.51□□□□□ -1.85
DDX28Q9NUL7 RPL23AP47-201ENST00000408017 460 ntBASIC3.51□□□□□ -1.85
DDX28Q9NUL7 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC3.51□□□□□ -1.85
DDX28Q9NUL7 AC006548.1-201ENST00000427470 102 ntBASIC3.51□□□□□ -1.85
DDX28Q9NUL7 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.51□□□□□ -1.85
DDX28Q9NUL7 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms