Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC4.59□□□□□ -1.68
CCDC140Q96MF4 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.68
CCDC140Q96MF4 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC4.59□□□□□ -1.68
CCDC140Q96MF4 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
CCDC140Q96MF4 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 AL591135.1-201ENST00000401578 5914 ntBASIC4.58□□□□□ -1.68
CCDC140Q96MF4 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 RNU6-715P-201ENST00000365204 103 ntBASIC4.58□□□□□ -1.68
CCDC140Q96MF4 RNA5SP296-201ENST00000410523 111 ntBASIC4.58□□□□□ -1.68
CCDC140Q96MF4 RNU6-370P-201ENST00000411008 104 ntBASIC4.58□□□□□ -1.68
CCDC140Q96MF4 AL354890.1-201ENST00000413730 346 ntBASIC4.58□□□□□ -1.68
CCDC140Q96MF4 LINC00701-201ENST00000418295 742 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 AC245884.2-201ENST00000426257 404 ntBASIC4.58□□□□□ -1.68
CCDC140Q96MF4 AC126120.1-201ENST00000431082 470 ntBASIC4.58□□□□□ -1.68
CCDC140Q96MF4 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 GTF2IP13-201ENST00000438487 386 ntBASIC4.58□□□□□ -1.68
CCDC140Q96MF4 RPL23AP89-201ENST00000439324 255 ntBASIC4.58□□□□□ -1.68
CCDC140Q96MF4 RPL7L1P1-201ENST00000448259 785 ntBASIC4.58□□□□□ -1.68
CCDC140Q96MF4 RN7SL515P-201ENST00000463999 297 ntBASIC4.58□□□□□ -1.68
CCDC140Q96MF4 DYNLL1P5-201ENST00000467158 270 ntBASIC4.58□□□□□ -1.68
CCDC140Q96MF4 AC090686.1-201ENST00000481577 749 ntBASIC4.58□□□□□ -1.68
CCDC140Q96MF4 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 RPS27P27-201ENST00000498779 255 ntBASIC4.58□□□□□ -1.68
CCDC140Q96MF4 VN1R104P-201ENST00000505115 1009 ntBASIC4.58□□□□□ -1.68
CCDC140Q96MF4 LINC01091-201ENST00000508111 645 ntTSL 5 BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 SCARNA18.1-201ENST00000516330 83 ntBASIC4.58□□□□□ -1.68
CCDC140Q96MF4 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 AP003396.4-201ENST00000527574 265 ntBASIC4.58□□□□□ -1.68
CCDC140Q96MF4 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 MEG8-215ENST00000555354 469 ntTSL 3 BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 AC005951.2-201ENST00000576282 495 ntBASIC4.58□□□□□ -1.68
CCDC140Q96MF4 AC138761.3-201ENST00000579993 334 ntBASIC4.58□□□□□ -1.68
CCDC140Q96MF4 MIR4310-201ENST00000582950 57 ntBASIC4.58□□□□□ -1.68
CCDC140Q96MF4 AC067852.3-201ENST00000589177 561 ntBASIC4.58□□□□□ -1.68
CCDC140Q96MF4 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 AC134503.1-201ENST00000633048 54 ntBASIC4.58□□□□□ -1.68
CCDC140Q96MF4 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 AL355834.1-201ENST00000556602 3965 ntBASIC4.58□□□□□ -1.68
CCDC140Q96MF4 DCN-218ENST00000551354 2924 ntTSL 3 BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC140Q96MF4 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 TTC41P-205ENST00000551270 3963 ntBASIC4.57□□□□□ -1.68
CCDC140Q96MF4 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 RNU6-474P-201ENST00000384243 107 ntBASIC4.57□□□□□ -1.68
CCDC140Q96MF4 RNU6-14P-201ENST00000384630 106 ntBASIC4.57□□□□□ -1.68
CCDC140Q96MF4 SNORA16.2-201ENST00000390991 127 ntBASIC4.57□□□□□ -1.68
CCDC140Q96MF4 SNORA75.4-201ENST00000391278 119 ntBASIC4.57□□□□□ -1.68
CCDC140Q96MF4 AC016739.1-201ENST00000405359 345 ntBASIC4.57□□□□□ -1.68
CCDC140Q96MF4 RPS4XP7-201ENST00000406274 780 ntBASIC4.57□□□□□ -1.68
CCDC140Q96MF4 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 AC119751.6-201ENST00000416712 186 ntBASIC4.57□□□□□ -1.68
CCDC140Q96MF4 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 MTND2P23-201ENST00000422990 651 ntBASIC4.57□□□□□ -1.68
CCDC140Q96MF4 REG1CP-206ENST00000447469 496 ntBASIC4.57□□□□□ -1.68
CCDC140Q96MF4 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 Z83838.1-202ENST00000456225 839 ntBASIC4.57□□□□□ -1.68
CCDC140Q96MF4 AC079168.1-201ENST00000458741 345 ntBASIC4.57□□□□□ -1.68
CCDC140Q96MF4 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 LSM3P4-201ENST00000502948 309 ntBASIC4.57□□□□□ -1.68
CCDC140Q96MF4 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 AC005741.1-201ENST00000511094 432 ntBASIC4.57□□□□□ -1.68
CCDC140Q96MF4 MEPE-206ENST00000511670 550 ntTSL 4 BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 RNU6-327P-201ENST00000516270 127 ntBASIC4.57□□□□□ -1.68
CCDC140Q96MF4 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC4.57□□□□□ -1.68
CCDC140Q96MF4 COPS8P3-201ENST00000526024 482 ntBASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms