Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 USP44-208ENST00000552440 1818 ntTSL 5 BASIC2.75□□□□□ -1.97
FOXA1P55317 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
FOXA1P55317 AL355379.1-201ENST00000405542 640 ntBASIC2.75□□□□□ -1.97
FOXA1P55317 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC2.75□□□□□ -1.97
FOXA1P55317 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC2.75□□□□□ -1.97
FOXA1P55317 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC2.75□□□□□ -1.97
FOXA1P55317 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC2.75□□□□□ -1.97
FOXA1P55317 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC2.75□□□□□ -1.97
FOXA1P55317 XKRY2-201ENST00000442362 1093 ntBASIC2.75□□□□□ -1.97
FOXA1P55317 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC2.75□□□□□ -1.97
FOXA1P55317 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC2.75□□□□□ -1.97
FOXA1P55317 AC126121.1-201ENST00000482313 553 ntBASIC2.75□□□□□ -1.97
FOXA1P55317 AC103975.1-201ENST00000482506 483 ntBASIC2.75□□□□□ -1.97
FOXA1P55317 RPL32P34-201ENST00000486380 400 ntBASIC2.75□□□□□ -1.97
FOXA1P55317 CAB39P1-201ENST00000502277 460 ntBASIC2.75□□□□□ -1.97
FOXA1P55317 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC2.75□□□□□ -1.97
FOXA1P55317 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC2.75□□□□□ -1.97
FOXA1P55317 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC2.75□□□□□ -1.97
FOXA1P55317 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
FOXA1P55317 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC2.75□□□□□ -1.97
FOXA1P55317 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC2.75□□□□□ -1.97
FOXA1P55317 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC2.75□□□□□ -1.97
FOXA1P55317 MIR5195-201ENST00000583555 115 ntBASIC2.75□□□□□ -1.97
FOXA1P55317 AC115085.1-201ENST00000588924 229 ntBASIC2.75□□□□□ -1.97
FOXA1P55317 AC006539.2-201ENST00000601729 572 ntBASIC2.75□□□□□ -1.97
FOXA1P55317 BNIP3P19-201ENST00000605397 577 ntBASIC2.75□□□□□ -1.97
FOXA1P55317 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC2.75□□□□□ -1.97
FOXA1P55317 CR392039.4-201ENST00000624968 501 ntBASIC2.75□□□□□ -1.97
FOXA1P55317 AC117529.2-201ENST00000512159 2068 ntBASIC2.75□□□□□ -1.97
FOXA1P55317 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
FOXA1P55317 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.75□□□□□ -1.97
FOXA1P55317 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
FOXA1P55317 DCAF13P3-201ENST00000561147 1334 ntBASIC2.74□□□□□ -1.97
FOXA1P55317 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
FOXA1P55317 SNORD88.1-201ENST00000408684 91 ntBASIC2.74□□□□□ -1.97
FOXA1P55317 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.74□□□□□ -1.97
FOXA1P55317 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC2.74□□□□□ -1.97
FOXA1P55317 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC2.74□□□□□ -1.97
FOXA1P55317 AC112653.1-201ENST00000443851 386 ntBASIC2.74□□□□□ -1.97
FOXA1P55317 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC2.74□□□□□ -1.97
FOXA1P55317 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
FOXA1P55317 RPL29P29-201ENST00000448725 423 ntBASIC2.74□□□□□ -1.97
FOXA1P55317 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC2.74□□□□□ -1.97
FOXA1P55317 RPL9P33-201ENST00000484311 566 ntBASIC2.74□□□□□ -1.97
FOXA1P55317 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC2.74□□□□□ -1.97
FOXA1P55317 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC2.74□□□□□ -1.97
FOXA1P55317 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC2.74□□□□□ -1.97
FOXA1P55317 AP002812.4-201ENST00000532139 286 ntBASIC2.74□□□□□ -1.97
FOXA1P55317 AL133271.1-201ENST00000538229 291 ntBASIC2.74□□□□□ -1.97
FOXA1P55317 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC2.74□□□□□ -1.97
FOXA1P55317 OR4T1P-201ENST00000554933 911 ntBASIC2.74□□□□□ -1.97
FOXA1P55317 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC2.74□□□□□ -1.97
FOXA1P55317 AC006504.3-201ENST00000586818 523 ntBASIC2.74□□□□□ -1.97
FOXA1P55317 ZNF92P3-201ENST00000596594 954 ntBASIC2.74□□□□□ -1.97
FOXA1P55317 SUMO2P14-201ENST00000604488 293 ntBASIC2.74□□□□□ -1.97
FOXA1P55317 KATNBL1P1-201ENST00000605192 748 ntBASIC2.74□□□□□ -1.97
FOXA1P55317 AC079791.1-201ENST00000605356 973 ntBASIC2.74□□□□□ -1.97
FOXA1P55317 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC2.74□□□□□ -1.97
FOXA1P55317 ATP5A1P2-202ENST00000616464 443 ntBASIC2.74□□□□□ -1.97
FOXA1P55317 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
FOXA1P55317 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
FOXA1P55317 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
FOXA1P55317 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC2.73□□□□□ -1.97
FOXA1P55317 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
FOXA1P55317 RNA5SP295-201ENST00000362655 121 ntBASIC2.73□□□□□ -1.97
FOXA1P55317 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC2.73□□□□□ -1.97
FOXA1P55317 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
FOXA1P55317 RNA5SP344-201ENST00000411081 104 ntBASIC2.73□□□□□ -1.97
FOXA1P55317 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC2.73□□□□□ -1.97
FOXA1P55317 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC2.73□□□□□ -1.97
FOXA1P55317 NEK4P1-201ENST00000433383 879 ntBASIC2.73□□□□□ -1.97
FOXA1P55317 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC2.73□□□□□ -1.97
FOXA1P55317 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC2.73□□□□□ -1.97
FOXA1P55317 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.73□□□□□ -1.97
FOXA1P55317 NIPA2P5-201ENST00000452282 464 ntBASIC2.73□□□□□ -1.97
FOXA1P55317 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.73□□□□□ -1.97
FOXA1P55317 AC108860.1-201ENST00000484521 383 ntBASIC2.73□□□□□ -1.97
FOXA1P55317 AC078817.1-201ENST00000492623 435 ntBASIC2.73□□□□□ -1.97
FOXA1P55317 OR9N1P-202ENST00000494289 481 ntBASIC2.73□□□□□ -1.97
FOXA1P55317 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC2.73□□□□□ -1.97
FOXA1P55317 AC091826.1-201ENST00000514065 313 ntBASIC2.73□□□□□ -1.97
FOXA1P55317 AL121603.1-201ENST00000553815 142 ntBASIC2.73□□□□□ -1.97
FOXA1P55317 OR4U1P-201ENST00000554958 912 ntBASIC2.73□□□□□ -1.97
FOXA1P55317 AL121594.4-201ENST00000556211 1196 ntBASIC2.73□□□□□ -1.97
FOXA1P55317 MTND4LP24-201ENST00000572277 291 ntBASIC2.73□□□□□ -1.97
FOXA1P55317 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC2.73□□□□□ -1.97
FOXA1P55317 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC2.73□□□□□ -1.97
FOXA1P55317 AC125494.3-201ENST00000602759 455 ntBASIC2.73□□□□□ -1.97
FOXA1P55317 AC079880.2-201ENST00000603790 1213 ntBASIC2.73□□□□□ -1.97
FOXA1P55317 AL160281.1-201ENST00000605307 311 ntBASIC2.73□□□□□ -1.97
FOXA1P55317 AL355802.4-201ENST00000607635 548 ntBASIC2.73□□□□□ -1.97
FOXA1P55317 AL162233.1-201ENST00000620014 944 ntBASIC2.73□□□□□ -1.97
FOXA1P55317 PCNP-208ENST00000627393 136 ntTSL 2 BASIC2.73□□□□□ -1.97
FOXA1P55317 MIR3651-201ENST00000630427 90 ntBASIC2.73□□□□□ -1.97
FOXA1P55317 FRG1DP-201ENST00000635586 771 ntBASIC2.73□□□□□ -1.97
FOXA1P55317 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC2.73□□□□□ -1.97
FOXA1P55317 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
FOXA1P55317 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
FOXA1P55317 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
FOXA1P55317 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC2.72□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms