Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 FABP5P6-201ENST00000510588 409 ntBASIC3.45□□□□□ -1.86
BRCA1P38398 HMGB1P47-201ENST00000511281 589 ntBASIC3.45□□□□□ -1.86
BRCA1P38398 AC008837.1-201ENST00000511513 412 ntBASIC3.45□□□□□ -1.86
BRCA1P38398 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.45□□□□□ -1.86
BRCA1P38398 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC3.45□□□□□ -1.86
BRCA1P38398 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
BRCA1P38398 AL442163.2-201ENST00000553912 710 ntBASIC3.45□□□□□ -1.86
BRCA1P38398 DEFB122-202ENST00000569013 197 ntBASIC3.45□□□□□ -1.86
BRCA1P38398 AC009163.5-201ENST00000575421 637 ntBASIC3.45□□□□□ -1.86
BRCA1P38398 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC3.45□□□□□ -1.86
BRCA1P38398 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.45□□□□□ -1.86
BRCA1P38398 AC110741.2-201ENST00000605278 268 ntBASIC3.45□□□□□ -1.86
BRCA1P38398 AL592295.2-201ENST00000612578 206 ntBASIC3.45□□□□□ -1.86
BRCA1P38398 AC015726.3-201ENST00000624501 418 ntBASIC3.45□□□□□ -1.86
BRCA1P38398 RNF6P1-201ENST00000444889 1784 ntBASIC3.44□□□□□ -1.86
BRCA1P38398 RNU6-984P-201ENST00000363236 109 ntBASIC3.44□□□□□ -1.86
BRCA1P38398 LSM5-205ENST00000409952 687 ntTSL 4 BASIC3.44□□□□□ -1.86
BRCA1P38398 BX276092.3-201ENST00000424182 230 ntBASIC3.44□□□□□ -1.86
BRCA1P38398 IPMKP1-201ENST00000425988 855 ntBASIC3.44□□□□□ -1.86
BRCA1P38398 HMGN2P3-201ENST00000433603 273 ntBASIC3.44□□□□□ -1.86
BRCA1P38398 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC3.44□□□□□ -1.86
BRCA1P38398 HMGN2P5-201ENST00000436882 273 ntBASIC3.44□□□□□ -1.86
BRCA1P38398 WASF1P1-201ENST00000447560 1131 ntBASIC3.44□□□□□ -1.86
BRCA1P38398 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC3.44□□□□□ -1.86
BRCA1P38398 AC005921.1-201ENST00000510589 286 ntBASIC3.44□□□□□ -1.86
BRCA1P38398 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC3.44□□□□□ -1.86
BRCA1P38398 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.44□□□□□ -1.86
BRCA1P38398 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC3.44□□□□□ -1.86
BRCA1P38398 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC3.44□□□□□ -1.86
BRCA1P38398 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.44□□□□□ -1.86
BRCA1P38398 AC078899.5-201ENST00000612475 178 ntBASIC3.44□□□□□ -1.86
BRCA1P38398 AK6-205ENST00000618980 483 ntTSL 2 BASIC3.44□□□□□ -1.86
BRCA1P38398 CTSLP2-204ENST00000629029 392 ntBASIC3.44□□□□□ -1.86
BRCA1P38398 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC3.44□□□□□ -1.86
BRCA1P38398 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
BRCA1P38398 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC3.44□□□□□ -1.86
BRCA1P38398 AC134882.1-201ENST00000603738 1676 ntBASIC3.44□□□□□ -1.86
BRCA1P38398 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
BRCA1P38398 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
BRCA1P38398 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
BRCA1P38398 AL139415.2-201ENST00000431968 163 ntBASIC3.43□□□□□ -1.86
BRCA1P38398 NDUFA5P10-201ENST00000432147 357 ntBASIC3.43□□□□□ -1.86
BRCA1P38398 AL606490.7-201ENST00000433136 191 ntBASIC3.43□□□□□ -1.86
BRCA1P38398 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.43□□□□□ -1.86
BRCA1P38398 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC3.43□□□□□ -1.86
BRCA1P38398 RPL7P31-201ENST00000450192 724 ntBASIC3.43□□□□□ -1.86
BRCA1P38398 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
BRCA1P38398 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC3.43□□□□□ -1.86
BRCA1P38398 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC3.43□□□□□ -1.86
BRCA1P38398 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
BRCA1P38398 AL109741.3-201ENST00000561748 592 ntBASIC3.43□□□□□ -1.86
BRCA1P38398 AL392112.1-201ENST00000605115 829 ntBASIC3.43□□□□□ -1.86
BRCA1P38398 AL391834.1-201ENST00000609609 560 ntBASIC3.43□□□□□ -1.86
BRCA1P38398 RMST_8.1-201ENST00000610287 165 ntBASIC3.43□□□□□ -1.86
BRCA1P38398 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC3.43□□□□□ -1.86
BRCA1P38398 AL136964.1-201ENST00000622038 2990 ntBASIC3.43□□□□□ -1.86
BRCA1P38398 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.43□□□□□ -1.86
BRCA1P38398 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
BRCA1P38398 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
BRCA1P38398 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
BRCA1P38398 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
BRCA1P38398 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
BRCA1P38398 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
BRCA1P38398 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.43□□□□□ -1.86
BRCA1P38398 TRAPPC13P1-201ENST00000435991 1062 ntBASIC3.43□□□□□ -1.86
BRCA1P38398 SUMO1P1-201ENST00000497904 306 ntBASIC3.43□□□□□ -1.86
BRCA1P38398 RNU6-551P-201ENST00000516661 103 ntBASIC3.43□□□□□ -1.86
BRCA1P38398 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC3.43□□□□□ -1.86
BRCA1P38398 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC3.43□□□□□ -1.86
BRCA1P38398 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC3.43□□□□□ -1.86
BRCA1P38398 AC245128.3-201ENST00000594721 748 ntBASIC3.43□□□□□ -1.86
BRCA1P38398 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC3.43□□□□□ -1.86
BRCA1P38398 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
BRCA1P38398 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
BRCA1P38398 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
BRCA1P38398 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
BRCA1P38398 RN7SKP44-201ENST00000363602 316 ntBASIC3.42□□□□□ -1.86
BRCA1P38398 AL590290.1-201ENST00000405336 380 ntBASIC3.42□□□□□ -1.86
BRCA1P38398 RPS4XP7-201ENST00000406274 780 ntBASIC3.42□□□□□ -1.86
BRCA1P38398 LSM5-206ENST00000409987 504 ntTSL 5 BASIC3.42□□□□□ -1.86
BRCA1P38398 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC3.42□□□□□ -1.86
BRCA1P38398 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC3.42□□□□□ -1.86
BRCA1P38398 TPTE2P1-204ENST00000435256 593 ntBASIC3.42□□□□□ -1.86
BRCA1P38398 OR5H3P-201ENST00000502817 919 ntBASIC3.42□□□□□ -1.86
BRCA1P38398 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC3.42□□□□□ -1.86
BRCA1P38398 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.42□□□□□ -1.86
BRCA1P38398 RNA5SP320-201ENST00000516263 124 ntBASIC3.42□□□□□ -1.86
BRCA1P38398 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC3.42□□□□□ -1.86
BRCA1P38398 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC3.42□□□□□ -1.86
BRCA1P38398 AC084757.1-201ENST00000559987 490 ntBASIC3.42□□□□□ -1.86
BRCA1P38398 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.42□□□□□ -1.86
BRCA1P38398 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.42□□□□□ -1.86
BRCA1P38398 AC055764.2-201ENST00000610089 670 ntBASIC3.42□□□□□ -1.86
BRCA1P38398 AC006111.3-201ENST00000622137 383 ntBASIC3.42□□□□□ -1.86
BRCA1P38398 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC3.42□□□□□ -1.86
BRCA1P38398 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC3.42□□□□□ -1.86
BRCA1P38398 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
BRCA1P38398 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.42□□□□□ -1.86
BRCA1P38398 AC013404.1-201ENST00000413068 249 ntBASIC3.41□□□□□ -1.86
BRCA1P38398 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC3.41□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms