Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 RNU6-780P-201ENST00000391030 104 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 CALM2P3-201ENST00000400429 449 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 RN7SKP106-201ENST00000410832 272 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 AC114755.2-201ENST00000413520 361 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC3.74□□□□□ -1.81
HOXD3P31249 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC3.74□□□□□ -1.81
HOXD3P31249 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC3.74□□□□□ -1.81
HOXD3P31249 GLRXP1-201ENST00000423261 334 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 RPL30P3-201ENST00000424262 333 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
HOXD3P31249 OR4F13P-201ENST00000428478 931 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXD3P31249 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXD3P31249 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
HOXD3P31249 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXD3P31249 RPL35AP21-201ENST00000437667 333 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC3.74□□□□□ -1.81
HOXD3P31249 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXD3P31249 AC000111.2-201ENST00000448200 210 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXD3P31249 AL162388.1-201ENST00000450912 352 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 FGF7P6-202ENST00000451282 293 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXD3P31249 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC3.74□□□□□ -1.81
HOXD3P31249 MTCO3P20-201ENST00000454926 688 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 AURKAPS2-201ENST00000454983 333 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC3.74□□□□□ -1.81
HOXD3P31249 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXD3P31249 RPL23AP56-201ENST00000460778 453 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 RN7SL517P-201ENST00000462240 305 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC3.74□□□□□ -1.81
HOXD3P31249 RPS3AP14-201ENST00000483907 780 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 AC011005.3-201ENST00000491624 395 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 AC026979.1-201ENST00000492525 396 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 AC073073.1-201ENST00000493920 463 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 AC093767.1-201ENST00000504523 156 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 AC108078.1-201ENST00000508073 725 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC3.74□□□□□ -1.81
HOXD3P31249 RNU6-1178P-201ENST00000516674 107 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 RN7SKP92-201ENST00000517266 244 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.74□□□□□ -1.81
HOXD3P31249 AP003467.2-201ENST00000520175 319 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC3.74□□□□□ -1.81
HOXD3P31249 AC024224.1-201ENST00000538284 609 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 PYM1-205ENST00000547925 499 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXD3P31249 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXD3P31249 ZNF519P2-201ENST00000557032 169 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXD3P31249 ATP5J2P6-201ENST00000565203 266 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 MTCO3P24-201ENST00000572729 782 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 SNORA74C-1-201ENST00000580726 201 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC3.74□□□□□ -1.81
HOXD3P31249 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC3.74□□□□□ -1.81
HOXD3P31249 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXD3P31249 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC3.74□□□□□ -1.81
HOXD3P31249 CKS1BP3-201ENST00000600888 237 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 BNIP3P30-201ENST00000601184 574 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 UBE2Q2P2-203ENST00000613592 761 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC3.74□□□□□ -1.81
HOXD3P31249 AC136475.10-201ENST00000620253 385 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC3.74□□□□□ -1.81
HOXD3P31249 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC3.74□□□□□ -1.81
HOXD3P31249 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
HOXD3P31249 ZNF33BP1-201ENST00000452497 1834 ntBASIC3.74□□□□□ -1.81
HOXD3P31249 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC3.74□□□□□ -1.81
HOXD3P31249 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
HOXD3P31249 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC3.74□□□□□ -1.81
HOXD3P31249 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
HOXD3P31249 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC3.73□□□□□ -1.81
HOXD3P31249 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC3.73□□□□□ -1.81
HOXD3P31249 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
HOXD3P31249 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC3.73□□□□□ -1.81
HOXD3P31249 THAP12P5-201ENST00000405864 2275 ntBASIC3.73□□□□□ -1.81
HOXD3P31249 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXD3P31249 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXD3P31249 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
HOXD3P31249 AL590240.1-201ENST00000334118 313 ntBASIC3.73□□□□□ -1.81
HOXD3P31249 RNU6-853P-201ENST00000364306 107 ntBASIC3.73□□□□□ -1.81
HOXD3P31249 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC3.73□□□□□ -1.81
HOXD3P31249 MIR181A1-201ENST00000385026 110 ntBASIC3.73□□□□□ -1.81
HOXD3P31249 SNORD115.1-201ENST00000391109 76 ntBASIC3.73□□□□□ -1.81
HOXD3P31249 SSXP10-201ENST00000402595 565 ntBASIC3.73□□□□□ -1.81
HOXD3P31249 GSTA9P-201ENST00000406231 611 ntBASIC3.73□□□□□ -1.81
HOXD3P31249 AL356967.1-201ENST00000406305 431 ntBASIC3.73□□□□□ -1.81
HOXD3P31249 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC3.73□□□□□ -1.81
HOXD3P31249 CCNG1P1-201ENST00000406783 885 ntBASIC3.73□□□□□ -1.81
HOXD3P31249 FCF1P10-201ENST00000407590 479 ntBASIC3.73□□□□□ -1.81
HOXD3P31249 RN7SKP100-201ENST00000411258 284 ntBASIC3.73□□□□□ -1.81
HOXD3P31249 AC078974.1-201ENST00000411597 223 ntBASIC3.73□□□□□ -1.81
HOXD3P31249 RPL18P10-201ENST00000425606 538 ntBASIC3.73□□□□□ -1.81
HOXD3P31249 PSMA6P3-201ENST00000428242 164 ntBASIC3.73□□□□□ -1.81
HOXD3P31249 AL590233.1-201ENST00000430017 456 ntBASIC3.73□□□□□ -1.81
HOXD3P31249 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC3.73□□□□□ -1.81
HOXD3P31249 MTND4LP10-201ENST00000435146 291 ntBASIC3.73□□□□□ -1.81
HOXD3P31249 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC3.73□□□□□ -1.81
HOXD3P31249 RABEPKP1-201ENST00000440529 1026 ntBASIC3.73□□□□□ -1.81
HOXD3P31249 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC3.73□□□□□ -1.81
HOXD3P31249 AL512326.1-201ENST00000443050 721 ntBASIC3.73□□□□□ -1.81
HOXD3P31249 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXD3P31249 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC3.73□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms