Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC2.65□□□□□ -1.99
COL6A3P12111 RPL23AP4-201ENST00000427757 463 ntBASIC2.64□□□□□ -1.99
COL6A3P12111 RPS26P40-201ENST00000435209 294 ntBASIC2.64□□□□□ -1.99
COL6A3P12111 TVP23BP2-201ENST00000455082 615 ntBASIC2.64□□□□□ -1.99
COL6A3P12111 AC112673.1-201ENST00000513168 575 ntBASIC2.64□□□□□ -1.99
COL6A3P12111 NPM1P35-201ENST00000533043 868 ntBASIC2.64□□□□□ -1.99
COL6A3P12111 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC2.64□□□□□ -1.99
COL6A3P12111 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC2.64□□□□□ -1.99
COL6A3P12111 AC135628.1-201ENST00000568867 534 ntBASIC2.64□□□□□ -1.99
COL6A3P12111 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC2.64□□□□□ -1.99
COL6A3P12111 AP001521.1-201ENST00000609150 300 ntBASIC2.64□□□□□ -1.99
COL6A3P12111 AC091046.2-201ENST00000620775 665 ntBASIC2.64□□□□□ -1.99
COL6A3P12111 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC2.64□□□□□ -1.99
COL6A3P12111 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
COL6A3P12111 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.64□□□□□ -1.99
COL6A3P12111 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC2.64□□□□□ -1.99
COL6A3P12111 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
COL6A3P12111 NANOGP5-201ENST00000424456 877 ntBASIC2.64□□□□□ -1.99
COL6A3P12111 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC2.64□□□□□ -1.99
COL6A3P12111 NPM1P49-201ENST00000448027 714 ntBASIC2.64□□□□□ -1.99
COL6A3P12111 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC2.64□□□□□ -1.99
COL6A3P12111 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC2.64□□□□□ -1.99
COL6A3P12111 VN1R80P-201ENST00000597126 338 ntBASIC2.64□□□□□ -1.99
COL6A3P12111 AC005296.1-201ENST00000616145 209 ntBASIC2.64□□□□□ -1.99
COL6A3P12111 AL589994.2-201ENST00000621124 579 ntBASIC2.64□□□□□ -1.99
COL6A3P12111 AC244205.2-202ENST00000635781 342 ntBASIC2.64□□□□□ -1.99
COL6A3P12111 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC2.64□□□□□ -1.99
COL6A3P12111 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC2.63□□□□□ -1.99
COL6A3P12111 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC2.63□□□□□ -1.99
COL6A3P12111 ZNF603P-201ENST00000405613 487 ntBASIC2.63□□□□□ -1.99
COL6A3P12111 REXO2-218ENST00000544827 880 ntTSL 3 BASIC2.63□□□□□ -1.99
COL6A3P12111 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.63□□□□□ -1.99
COL6A3P12111 AP004372.1-201ENST00000604842 844 ntBASIC2.63□□□□□ -1.99
COL6A3P12111 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC2.63□□□□□ -1.99
COL6A3P12111 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
COL6A3P12111 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
COL6A3P12111 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC2.63□□□□□ -1.99
COL6A3P12111 AP002088.1-201ENST00000382740 395 ntBASIC2.63□□□□□ -1.99
COL6A3P12111 ENSA-210ENST00000503241 574 ntTSL 3 BASIC2.63□□□□□ -1.99
COL6A3P12111 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC2.63□□□□□ -1.99
COL6A3P12111 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.63□□□□□ -1.99
COL6A3P12111 RMST_2.1-201ENST00000617263 136 ntBASIC2.63□□□□□ -1.99
COL6A3P12111 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC2.63□□□□□ -1.99
COL6A3P12111 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC2.63□□□□□ -1.99
COL6A3P12111 RNU6-1140P-201ENST00000410517 106 ntBASIC2.63□□□□□ -1.99
COL6A3P12111 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC2.63□□□□□ -1.99
COL6A3P12111 RAC1P5-201ENST00000512182 576 ntBASIC2.63□□□□□ -1.99
COL6A3P12111 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC2.63□□□□□ -1.99
COL6A3P12111 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC2.63□□□□□ -1.99
COL6A3P12111 AC026241.1-201ENST00000517873 2142 ntBASIC2.63□□□□□ -1.99
COL6A3P12111 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC2.63□□□□□ -1.99
COL6A3P12111 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC2.62□□□□□ -1.99
COL6A3P12111 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.62□□□□□ -1.99
COL6A3P12111 OR52B1P-201ENST00000316506 909 ntBASIC2.62□□□□□ -1.99
COL6A3P12111 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
COL6A3P12111 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC2.62□□□□□ -1.99
COL6A3P12111 AC107027.3-201ENST00000565095 3473 ntBASIC2.62□□□□□ -1.99
COL6A3P12111 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
COL6A3P12111 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
COL6A3P12111 SNORD62.1-201ENST00000362541 86 ntBASIC2.62□□□□□ -1.99
COL6A3P12111 AC105918.1-201ENST00000474399 838 ntBASIC2.62□□□□□ -1.99
COL6A3P12111 RPL23AP49-201ENST00000492925 468 ntBASIC2.62□□□□□ -1.99
COL6A3P12111 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
COL6A3P12111 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC2.62□□□□□ -1.99
COL6A3P12111 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC2.62□□□□□ -1.99
COL6A3P12111 TTC39DP-201ENST00000416781 1688 ntBASIC2.62□□□□□ -1.99
COL6A3P12111 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
COL6A3P12111 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
COL6A3P12111 RNU6-707P-201ENST00000364647 95 ntBASIC2.61□□□□□ -1.99
COL6A3P12111 FGF7P8-201ENST00000402994 292 ntBASIC2.61□□□□□ -1.99
COL6A3P12111 HMGB3P6-201ENST00000444896 598 ntBASIC2.61□□□□□ -1.99
COL6A3P12111 RPL21P134-201ENST00000453468 483 ntBASIC2.61□□□□□ -1.99
COL6A3P12111 OR5AK3P-201ENST00000527486 1297 ntBASIC2.61□□□□□ -1.99
COL6A3P12111 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.61□□□□□ -1.99
COL6A3P12111 AC026464.5-201ENST00000562497 722 ntBASIC2.61□□□□□ -1.99
COL6A3P12111 MIR4738-201ENST00000579134 87 ntBASIC2.61□□□□□ -1.99
COL6A3P12111 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.61□□□□□ -1.99
COL6A3P12111 METTL8-218ENST00000638989 876 ntTSL 5 BASIC2.61□□□□□ -1.99
COL6A3P12111 METTL8-219ENST00000640734 726 ntTSL 2 BASIC2.61□□□□□ -1.99
COL6A3P12111 MTND5P29-201ENST00000458676 1807 ntBASIC2.61□□□□□ -1.99
COL6A3P12111 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC2.61□□□□□ -1.99
COL6A3P12111 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC2.61□□□□□ -1.99
COL6A3P12111 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.61□□□□□ -1.99
COL6A3P12111 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC2.61□□□□□ -1.99
COL6A3P12111 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC2.61□□□□□ -1.99
COL6A3P12111 AC118282.1-201ENST00000506408 765 ntBASIC2.61□□□□□ -1.99
COL6A3P12111 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
COL6A3P12111 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
COL6A3P12111 AC007342.7-201ENST00000624610 2337 ntBASIC2.61□□□□□ -1.99
COL6A3P12111 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.61□□□□□ -1.99
COL6A3P12111 EPGN-201ENST00000332112 847 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
COL6A3P12111 AP000893.1-201ENST00000474462 794 ntBASIC2.61□□□□□ -1.99
COL6A3P12111 THAP6-203ENST00000502620 582 ntTSL 3 BASIC2.61□□□□□ -1.99
COL6A3P12111 AC007424.1-203ENST00000554613 687 ntBASIC2.61□□□□□ -1.99
COL6A3P12111 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.6□□□□□ -1.99
COL6A3P12111 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
COL6A3P12111 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
COL6A3P12111 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC2.6□□□□□ -1.99
COL6A3P12111 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC2.6□□□□□ -1.99
COL6A3P12111 LUZP4P1-201ENST00000415420 344 ntBASIC2.6□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms