Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.55□□□□□ -1.84
MSH4O15457 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
MSH4O15457 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.55□□□□□ -1.84
MSH4O15457 TMEM161BP1-201ENST00000457388 1457 ntBASIC3.54□□□□□ -1.84
MSH4O15457 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
MSH4O15457 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
MSH4O15457 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
MSH4O15457 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC3.54□□□□□ -1.84
MSH4O15457 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
MSH4O15457 RPL7P26-201ENST00000333817 754 ntBASIC3.54□□□□□ -1.84
MSH4O15457 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
MSH4O15457 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.54□□□□□ -1.84
MSH4O15457 BTBD10P2-201ENST00000404779 676 ntBASIC3.54□□□□□ -1.84
MSH4O15457 TRIM60P5Y-201ENST00000413946 574 ntBASIC3.54□□□□□ -1.84
MSH4O15457 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC3.54□□□□□ -1.84
MSH4O15457 PAICSP7-201ENST00000419829 962 ntBASIC3.54□□□□□ -1.84
MSH4O15457 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
MSH4O15457 DEFB130D-201ENST00000426866 237 ntBASIC3.54□□□□□ -1.84
MSH4O15457 PSMA2P3-201ENST00000429685 675 ntBASIC3.54□□□□□ -1.84
MSH4O15457 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.54□□□□□ -1.84
MSH4O15457 AC108734.1-201ENST00000439549 399 ntBASIC3.54□□□□□ -1.84
MSH4O15457 AL671855.1-201ENST00000446875 1203 ntBASIC3.54□□□□□ -1.84
MSH4O15457 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.54□□□□□ -1.84
MSH4O15457 AC017015.1-201ENST00000477387 286 ntBASIC3.54□□□□□ -1.84
MSH4O15457 SNORA70.14-201ENST00000516205 110 ntBASIC3.54□□□□□ -1.84
MSH4O15457 AP001207.2-201ENST00000519490 539 ntBASIC3.54□□□□□ -1.84
MSH4O15457 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC3.54□□□□□ -1.84
MSH4O15457 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.54□□□□□ -1.84
MSH4O15457 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC3.54□□□□□ -1.84
MSH4O15457 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.54□□□□□ -1.84
MSH4O15457 CENPUP2-201ENST00000555897 1186 ntBASIC3.54□□□□□ -1.84
MSH4O15457 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC3.54□□□□□ -1.84
MSH4O15457 EIF5A2P1-201ENST00000564027 460 ntBASIC3.54□□□□□ -1.84
MSH4O15457 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.54□□□□□ -1.84
MSH4O15457 RNA5SP108-201ENST00000605921 117 ntBASIC3.54□□□□□ -1.84
MSH4O15457 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC3.54□□□□□ -1.84
MSH4O15457 AC106730.3-201ENST00000624568 641 ntBASIC3.54□□□□□ -1.84
MSH4O15457 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
MSH4O15457 AL021368.2-201ENST00000606125 5352 ntBASIC3.54□□□□□ -1.84
MSH4O15457 EXOC5P1-201ENST00000510543 1969 ntBASIC3.54□□□□□ -1.84
MSH4O15457 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.54□□□□□ -1.84
MSH4O15457 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
MSH4O15457 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC3.53□□□□□ -1.84
MSH4O15457 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
MSH4O15457 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
MSH4O15457 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC3.53□□□□□ -1.84
MSH4O15457 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
MSH4O15457 RNU6-356P-201ENST00000384140 107 ntBASIC3.53□□□□□ -1.84
MSH4O15457 SKINT1L-201ENST00000401057 817 ntBASIC3.53□□□□□ -1.84
MSH4O15457 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC3.53□□□□□ -1.84
MSH4O15457 AL159169.1-201ENST00000421119 127 ntBASIC3.53□□□□□ -1.84
MSH4O15457 OR51AB1P-201ENST00000429046 620 ntBASIC3.53□□□□□ -1.84
MSH4O15457 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC3.53□□□□□ -1.84
MSH4O15457 RAB11AP1-201ENST00000442978 646 ntBASIC3.53□□□□□ -1.84
MSH4O15457 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.53□□□□□ -1.84
MSH4O15457 RPL5P24-201ENST00000463742 885 ntBASIC3.53□□□□□ -1.84
MSH4O15457 PRDX3P4-201ENST00000470828 747 ntBASIC3.53□□□□□ -1.84
MSH4O15457 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
MSH4O15457 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC3.53□□□□□ -1.84
MSH4O15457 PTGES3P3-201ENST00000511479 482 ntBASIC3.53□□□□□ -1.84
MSH4O15457 FTH1P9-201ENST00000513251 355 ntBASIC3.53□□□□□ -1.84
MSH4O15457 PRELID3BP4-201ENST00000515476 571 ntBASIC3.53□□□□□ -1.84
MSH4O15457 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.53□□□□□ -1.84
MSH4O15457 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC3.53□□□□□ -1.84
MSH4O15457 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC3.53□□□□□ -1.84
MSH4O15457 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
MSH4O15457 OR8L1P-201ENST00000534005 955 ntBASIC3.53□□□□□ -1.84
MSH4O15457 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.53□□□□□ -1.84
MSH4O15457 MTND4LP25-201ENST00000570218 163 ntBASIC3.53□□□□□ -1.84
MSH4O15457 MIR4504-201ENST00000577413 92 ntBASIC3.53□□□□□ -1.84
MSH4O15457 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.53□□□□□ -1.84
MSH4O15457 AL365400.2-201ENST00000605604 902 ntBASIC3.53□□□□□ -1.84
MSH4O15457 AP005229.2-201ENST00000609980 697 ntBASIC3.53□□□□□ -1.84
MSH4O15457 AC084824.5-201ENST00000612009 413 ntBASIC3.53□□□□□ -1.84
MSH4O15457 ZNF849P-201ENST00000594711 1566 ntBASIC3.53□□□□□ -1.84
MSH4O15457 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.53□□□□□ -1.84
MSH4O15457 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.53□□□□□ -1.84
MSH4O15457 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC3.53□□□□□ -1.84
MSH4O15457 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.53□□□□□ -1.84
MSH4O15457 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.53□□□□□ -1.84
MSH4O15457 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.53□□□□□ -1.85
MSH4O15457 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.52□□□□□ -1.85
MSH4O15457 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.52□□□□□ -1.85
MSH4O15457 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
MSH4O15457 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.52□□□□□ -1.85
MSH4O15457 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
MSH4O15457 AC025263.3-201ENST00000622965 1396 ntBASIC3.52□□□□□ -1.85
MSH4O15457 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.52□□□□□ -1.85
MSH4O15457 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
MSH4O15457 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
MSH4O15457 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
MSH4O15457 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
MSH4O15457 AC011978.2-201ENST00000569835 2054 ntBASIC3.52□□□□□ -1.85
MSH4O15457 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
MSH4O15457 RNU6-354P-201ENST00000383862 107 ntBASIC3.52□□□□□ -1.85
MSH4O15457 RNU6-610P-201ENST00000384264 107 ntBASIC3.52□□□□□ -1.85
MSH4O15457 SNORA54-201ENST00000384281 123 ntBASIC3.52□□□□□ -1.85
MSH4O15457 RNU6-1151P-201ENST00000384684 107 ntBASIC3.52□□□□□ -1.85
MSH4O15457 RPL17P50-201ENST00000396131 546 ntBASIC3.52□□□□□ -1.85
MSH4O15457 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms